View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3308_high_31 (Length: 303)
Name: NF3308_high_31
Description: NF3308
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3308_high_31 |
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Alignment Details
Target: chr3 (Bit Score: 246; Significance: 1e-136; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 19 - 288
Target Start/End: Complemental strand, 46810265 - 46809996
Alignment:
| Q |
19 |
ctaaactgcaacataatggtttttaatgttgtcgaagccacaatgtgactgcgattgaggttggatcggccatgtttggccacgattctctatcaaggat |
118 |
Q |
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| T |
46810265 |
ctaaactgcaacataatggtttttgatgttgtcgaaaccacaatgtgactgcgactgaggttggatcggccaagtttggccacgattctctatcaaggat |
46810166 |
T |
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| Q |
119 |
agcgagacagctgtgactgtatcacaaccactatttataatcatatatacgacgggcatttcatcctaaacttgttatcaatctatgcagctacttcgta |
218 |
Q |
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| T |
46810165 |
agcgagacagctgtgactgtatcacaaccgctatttataatcatatatacgacgggcatttcatcctaaacttgttatcaatctatgcagctacttcgtg |
46810066 |
T |
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| Q |
219 |
tcgcaggagttaatagcataccaatttggtttgaagctggtgcagtaaaatacgagtttgccaacacagg |
288 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46810065 |
tcgcaggagttaatagcataccaatttggtttgaagctggtgcagtaaaatacgagtttgccaacacagg |
46809996 |
T |
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