View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3308_high_33 (Length: 292)

Name: NF3308_high_33
Description: NF3308
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3308_high_33
NF3308_high_33
[»] chr6 (3 HSPs)
chr6 (1-237)||(25087487-25087723)
chr6 (144-214)||(32838170-32838239)
chr6 (190-233)||(32555785-32555828)
[»] chr3 (5 HSPs)
chr3 (1-75)||(34507640-34507713)
chr3 (1-86)||(35227511-35227596)
chr3 (4-86)||(27621608-27621690)
chr3 (4-86)||(34507286-34507368)
chr3 (157-224)||(44926172-44926238)
[»] chr5 (6 HSPs)
chr5 (151-233)||(6726429-6726511)
chr5 (158-233)||(24123273-24123347)
chr5 (146-233)||(25982587-25982671)
chr5 (188-237)||(22732147-22732196)
chr5 (164-233)||(40555602-40555670)
chr5 (168-232)||(16556056-16556118)
[»] chr8 (1 HSPs)
chr8 (159-214)||(43675251-43675305)
[»] chr4 (1 HSPs)
chr4 (144-233)||(26784754-26784842)
[»] chr2 (2 HSPs)
chr2 (145-201)||(13506971-13507026)
chr2 (151-235)||(13533316-13533398)


Alignment Details
Target: chr6 (Bit Score: 205; Significance: 1e-112; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 25087723 - 25087487
Alignment:
Q  1 gagaatgtttcctagacgttggaggaattcaatttcttgcctacttttattcctctggaaatctagaaaaagtttaacgacggatttcgcaaaaactgtt 100  Q
    |||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||    
T  25087723 gagaatatttcctagaagttggaggaattcaatttcttgcctacttttattcctctggaaatccagaaaaagtttaacgacggatttcgcaaaaactatt 25087624  T
Q  101 gtatttttataatgaaataaagagaaacgataattaatgctcaagttaaggaaacaaatatataaatattgtattgagaagttgtgaaaaagttgtatat 200  Q
    |||||| |||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25087623 gtatttctataataaaataaagagaaacgataactaatgctcaagttaaggaaacaaatatataaatattgtattgagaagttgtgaaaaagttgtatat 25087524  T
Q  201 tcaactttttgaaattcaaaaatttgttgtttttaat 237  Q
    ||||||||||||||||||| |||||||||||||||||    
T  25087523 tcaactttttgaaattcaagaatttgttgtttttaat 25087487  T

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Target: chr6; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 144 - 214
Target Start/End: Original strand, 32838170 - 32838239
Alignment:
Q  144 agttaaggaaacaaatatataaatattgtattga-gaagttgtgaaaaagttgtatattcaactttttgaaa 214  Q
    |||||||||||| |||||| |||||||||||||| |||  ||||||||||||||||||||||||||||||||    
T  32838170 agttaaggaaaccaatataaaaatattgtattgatgaa--tgtgaaaaagttgtatattcaactttttgaaa 32838239  T

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Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 190 - 233
Target Start/End: Complemental strand, 32555828 - 32555785
Alignment:
Q  190 aagttgtatattcaactttttgaaattcaaaaatttgttgtttt 233  Q
    ||||||||||||||||||||| ||||| ||||||| ||||||||    
T  32555828 aagttgtatattcaactttttaaaatttaaaaattagttgtttt 32555785  T

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Target: chr3 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 34507713 - 34507640
Alignment:
Q  1 gagaatgtttcctagacgttggaggaattcaatttcttgcctacttttattcctctggaaatctagaaaaagttt 75  Q
    |||||||||||||||| ||||||||||||||||| ||| ||||||||||||||| |   ||||||||||||||||    
T  34507713 gagaatgtttcctagatgttggaggaattcaattgcttccctacttttattcct-tcagaatctagaaaaagttt 34507640  T

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Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 1 - 86
Target Start/End: Original strand, 35227511 - 35227596
Alignment:
Q  1 gagaatgtttcctagacgttggaggaattcaatttcttgcctacttttattcctctggaaatctagaaaaagtttaacgacggatt 86  Q
    |||||||||||| ||  ||||||||||||||||| ||| |||||||||||||||   |||||| ||||||||||| | ||||||||    
T  35227511 gagaatgtttcccagttgttggaggaattcaattgcttccctacttttattccttcagaaatccagaaaaagttttatgacggatt 35227596  T

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Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 4 - 86
Target Start/End: Complemental strand, 27621690 - 27621608
Alignment:
Q  4 aatgtttcctagacgttggaggaattcaatttcttgcctacttttattcctctggaaatctagaaaaagtttaacgacggatt 86  Q
    ||||||||| ||  ||||||||||||||||  ||| |||||||||||||||   |||||| ||||||||||| | ||||||||    
T  27621690 aatgtttcccagttgttggaggaattcaatagcttccctacttttattccttcagaaatccagaaaaagttttatgacggatt 27621608  T

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Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 4 - 86
Target Start/End: Original strand, 34507286 - 34507368
Alignment:
Q  4 aatgtttcctagacgttggaggaattcaatttcttgcctacttttattcctctggaaatctagaaaaagtttaacgacggatt 86  Q
    ||||||||| ||  ||||||||||||||||  ||| |||||||||||||||   |||||| ||||||||||| | ||||||||    
T  34507286 aatgtttcccagttgttggaggaattcaatagcttccctacttttattccttcagaaatccagaaaaagttttatgacggatt 34507368  T

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Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 157 - 224
Target Start/End: Complemental strand, 44926238 - 44926172
Alignment:
Q  157 aatatataaatattgtattgagaagttgtgaaaaagttgtatattcaactttttgaaattcaaaaatt 224  Q
    |||||| |||||||| ||||||||||  |||||| ||||||||||||| ||||||||| |||| ||||    
T  44926238 aatatagaaatattgaattgagaagta-tgaaaatgttgtatattcaaatttttgaaagtcaataatt 44926172  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000003; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 151 - 233
Target Start/End: Original strand, 6726429 - 6726511
Alignment:
Q  151 gaaacaaatatataaatattgtattgagaagttgtgaaaaagttgtatattc-aactttttgaaattcaaaaatttgttgtttt 233  Q
    ||||| |||||||||||| ||||||| ||| | || |||||||||||||||| |||||||||||| ||||||| ||||| ||||    
T  6726429 gaaactaatatataaataatgtattgtgaaatggt-aaaaagttgtatattctaactttttgaaagtcaaaaaattgttatttt 6726511  T

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Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 158 - 233
Target Start/End: Original strand, 24123273 - 24123347
Alignment:
Q  158 atatataaatattgtattgagaagttgtgaaaaagttgtatattcaactttttgaaattcaaaaatttgttgtttt 233  Q
    ||||| ||||||||||||| |||||| ||| |||||||||||||||  ||||| ||| |||| |||||||||||||    
T  24123273 atataaaaatattgtattgggaagtt-tgagaaagttgtatattcattttttttaaaatcaagaatttgttgtttt 24123347  T

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Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 146 - 233
Target Start/End: Complemental strand, 25982671 - 25982587
Alignment:
Q  146 ttaaggaaacaaatatataaatattgtattgagaagttgtgaaaaagttgtatattcaactttttgaaattcaaaaatttgttgtttt 233  Q
    |||| ||||| |||||| |||||||||||||| ||||  |||||  | ||||||||||||||||||||| | || |||||||||||||    
T  25982671 ttaaagaaaccaatatagaaatattgtattgaaaagt--tgaaagggatgtatattcaactttttgaaagt-aagaatttgttgtttt 25982587  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 188 - 237
Target Start/End: Complemental strand, 22732196 - 22732147
Alignment:
Q  188 aaaagttgtatattcaactttttgaaattcaaaaatttgttgtttttaat 237  Q
    |||||| | |||||||||||| ||||||||||||| || |||||||||||    
T  22732196 aaaagtagaatattcaactttatgaaattcaaaaaattattgtttttaat 22732147  T

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Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 164 - 233
Target Start/End: Complemental strand, 40555670 - 40555602
Alignment:
Q  164 aaatattgtattgagaagttgtgaaaaagttgtatattcaactttttgaaattcaaaaatttgttgtttt 233  Q
    |||| ||| |||||||| |||| ||||| |||||| ||||||||||| ||| ||||||||||||| ||||    
T  40555670 aaattttgcattgagaa-ttgttaaaaaattgtatgttcaactttttaaaagtcaaaaatttgttatttt 40555602  T

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Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 168 - 232
Target Start/End: Original strand, 16556056 - 16556118
Alignment:
Q  168 attgtattgagaagttgtgaaaaagttgtatattcaactttttgaaattcaaaaatttgttgttt 232  Q
    ||||||||||||| |||||||||||| | |||||||||||||| ||| ||||| | |||||||||    
T  16556056 attgtattgagaa-ttgtgaaaaagt-gaatattcaactttttaaaagtcaaacagttgttgttt 16556118  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 159 - 214
Target Start/End: Original strand, 43675251 - 43675305
Alignment:
Q  159 tatataaatattgtattgagaagttgtgaaaaagttgtatattcaactttttgaaa 214  Q
    |||| ||||||||||||| ||||| ||| ||||||||||||||| |||||||||||    
T  43675251 tatagaaatattgtattgggaagt-gtggaaaagttgtatattctactttttgaaa 43675305  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 144 - 233
Target Start/End: Complemental strand, 26784842 - 26784754
Alignment:
Q  144 agttaaggaaacaaatatataaatattgtattgagaagttgtgaaaaagttgtatattcaactttttgaaattcaaaaatttgttgtttt 233  Q
    ||||||||| || ||| || |||| ||| |||| ||| |||| ||||||| |||| ||||||||||| ||| |||||| |||||||||||    
T  26784842 agttaaggagactaatttagaaattttgcattg-gaaattgttaaaaagtggtatgttcaactttttaaaagtcaaaagtttgttgtttt 26784754  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 145 - 201
Target Start/End: Complemental strand, 13507026 - 13506971
Alignment:
Q  145 gttaaggaaacaaatatataaatattgtattgagaagttgtgaaaaagttgtatatt 201  Q
    ||||||||||  |||||| |||||||||||||| ||| | |||||||||||||||||    
T  13507026 gttaaggaaattaatataaaaatattgtattga-aaggtatgaaaaagttgtatatt 13506971  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 151 - 235
Target Start/End: Original strand, 13533316 - 13533398
Alignment:
Q  151 gaaacaaatatataaatattgtattgagaagttgtgaaaaagttgtatattcaactttttgaaattcaaaaatttgttgttttta 235  Q
    ||||| |||||| ||| ||||| |||||||||  |||||||||||||  ||||||||||| ||| |||||||||| || ||||||    
T  13533316 gaaaccaatatagaaa-attgtgttgagaagta-tgaaaaagttgtacgttcaactttttaaaagtcaaaaatttattattttta 13533398  T

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