View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3308_high_42 (Length: 251)

Name: NF3308_high_42
Description: NF3308
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3308_high_42
NF3308_high_42
[»] chr6 (2 HSPs)
chr6 (1-232)||(33840206-33840437)
chr6 (1-232)||(33844198-33844429)
[»] chr3 (2 HSPs)
chr3 (83-138)||(25601740-25601795)
chr3 (83-176)||(25596897-25596990)
[»] chr8 (1 HSPs)
chr8 (82-136)||(35335884-35335938)
[»] chr7 (1 HSPs)
chr7 (83-140)||(44501441-44501498)
[»] chr4 (10 HSPs)
chr4 (91-167)||(15527286-15527362)
chr4 (82-130)||(18364244-18364292)
chr4 (82-130)||(36598633-36598681)
chr4 (181-219)||(36637042-36637080)
chr4 (150-216)||(55967095-55967161)
chr4 (82-123)||(35974057-35974098)
chr4 (87-140)||(36656422-36656475)
chr4 (83-135)||(18359232-18359284)
chr4 (83-135)||(36603644-36603696)
chr4 (82-134)||(38863151-38863203)


Alignment Details
Target: chr6 (Bit Score: 203; Significance: 1e-111; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 232
Target Start/End: Original strand, 33840206 - 33840437
Alignment:
Q  1 aagagtcaaaatcttagacacgaatgtgaaaaattgcttttcttttccacggaataaggttgaggaatgcnnnnnnngttctggaatacgtttccaaaga 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||       |||||||||||||||||||||||    
T  33840206 aagagtcaaaatcttagacacgaatgtgaaaaattgcttttcttttccacggaataaagttgaggaatgcaaaaaaagttctggaatacgtttccaaaga 33840305  T
Q  101 tgtttccatctggtggacaaaatgcaagttcgaacagcgtattctattctcaaaaatgacaaaatgtaaacaagaaggcagtcgggtaagtcacttagtc 200  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33840306 tgtttccatctggtggacaaaatgcaagttcgaacagcgtattcgattctcaaaaatgacaaaatgtaaacaagaaggcagtcgggtaagtcacttagtc 33840405  T
Q  201 tgtcttcactttcttcgttttcggagtgactt 232  Q
    ||||||||||||||||||||||||||||||||    
T  33840406 tgtcttcactttcttcgttttcggagtgactt 33840437  T

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Target: chr6; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 1 - 232
Target Start/End: Original strand, 33844198 - 33844429
Alignment:
Q  1 aagagtcaaaatcttagacacgaatgtgaaaaattgcttttcttttccacggaataaggttgaggaatgcnnnnnnngttctggaatacgtttccaaaga 100  Q
    ||||||||||||||||||||||||||| ||||||| ||  || |    || |||||| ||||||||| ||       |||  |||||||||||||| |||    
T  33844198 aagagtcaaaatcttagacacgaatgtcaaaaatttctcgtcctccaaacagaataaagttgaggaacgcaacaaaagtttaggaatacgtttccagaga 33844297  T
Q  101 tgtttccatctggtggacaaaatgcaagttcgaacagcgtattctattctcaaaaatgacaaaatgtaaacaagaaggcagtcgggtaagtcacttagtc 200  Q
    |||||||||||||||||||||||||||||| |||| |||| |||  || ||||||||||||||||||||| ||||| |||||||||||||||||||||||    
T  33844298 tgtttccatctggtggacaaaatgcaagtttgaacggcgttttcggttttcaaaaatgacaaaatgtaaataagaatgcagtcgggtaagtcacttagtc 33844397  T
Q  201 tgtcttcactttcttcgttttcggagtgactt 232  Q
    | |||||||||||||||||||| ||| |||||    
T  33844398 tatcttcactttcttcgttttcagagcgactt 33844429  T

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Target: chr3 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 83 - 138
Target Start/End: Complemental strand, 25601795 - 25601740
Alignment:
Q  83 ggaatacgtttccaaagatgtttccatctggtggacaaaatgcaagttcgaacagc 138  Q
    |||||||||||||||||||  |||||||| |||||||||||||||||| |||||||    
T  25601795 ggaatacgtttccaaagatacttccatcttgtggacaaaatgcaagtttgaacagc 25601740  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 83 - 176
Target Start/End: Complemental strand, 25596990 - 25596897
Alignment:
Q  83 ggaatacgtttccaaagatgtttccatctggtggacaaaatgcaagttcgaacagcgtattctattctcaaaaatgacaaaatgtaaacaagaa 176  Q
    |||||| ||||||||||||  |||||||| || ||||||||||||||| |||| || || |   |  |||||||||||||||||| || |||||    
T  25596990 ggaatatgtttccaaagattcttccatctcgtagacaaaatgcaagtttgaacggcatacttggtattcaaaaatgacaaaatgtgaagaagaa 25596897  T

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Target: chr8 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 82 - 136
Target Start/End: Complemental strand, 35335938 - 35335884
Alignment:
Q  82 tggaatacgtttccaaagatgtttccatctggtggacaaaatgcaagttcgaaca 136  Q
    ||||||||||||||| ||||||||||||||  ||||||||| ||||||| |||||    
T  35335938 tggaatacgtttccatagatgtttccatcttttggacaaaacgcaagtttgaaca 35335884  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 83 - 140
Target Start/End: Original strand, 44501441 - 44501498
Alignment:
Q  83 ggaatacgtttccaaagatgtttccatctggtggacaaaatgcaagttcgaacagcgt 140  Q
    |||| ||||||||||||||  |||||||||| |||||||||||||||  |||||||||    
T  44501441 ggaagacgtttccaaagatccttccatctgggggacaaaatgcaagtctgaacagcgt 44501498  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 91 - 167
Target Start/End: Original strand, 15527286 - 15527362
Alignment:
Q  91 tttccaaagatgtttccatctggtggacaaaatgcaagttcgaacagcgtattctattctcaaaaatgacaaaatgt 167  Q
    |||||||| ||| | ||||||  |||||| |||||||||||||||||||| ||   | |||||||||||||||||||    
T  15527286 tttccaaatatgctcccatcttttggacagaatgcaagttcgaacagcgtctttagtgctcaaaaatgacaaaatgt 15527362  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 82 - 130
Target Start/End: Complemental strand, 18364292 - 18364244
Alignment:
Q  82 tggaatacgtttccaaagatgtttccatctggtggacaaaatgcaagtt 130  Q
    |||||| ||||||||||||||||||||||| || ||||||||| |||||    
T  18364292 tggaatgcgtttccaaagatgtttccatcttgtagacaaaatggaagtt 18364244  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 82 - 130
Target Start/End: Original strand, 36598633 - 36598681
Alignment:
Q  82 tggaatacgtttccaaagatgtttccatctggtggacaaaatgcaagtt 130  Q
    |||||| ||||||||||||||||||||||| || ||||||||| |||||    
T  36598633 tggaatgcgtttccaaagatgtttccatcttgtagacaaaatggaagtt 36598681  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 181 - 219
Target Start/End: Original strand, 36637042 - 36637080
Alignment:
Q  181 gtcgggtaagtcacttagtctgtcttcactttcttcgtt 219  Q
    ||||||||||||||| || ||||||||||||||||||||    
T  36637042 gtcgggtaagtcactcagcctgtcttcactttcttcgtt 36637080  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 150 - 216
Target Start/End: Original strand, 55967095 - 55967161
Alignment:
Q  150 tcaaaaatgacaaaatgtaaacaagaaggcagtcgggtaagtcacttagtctgtcttcactttcttc 216  Q
    |||||||||| ||||||| ||  ||||  | ||||||||||||||||  ||||||||||||||||||    
T  55967095 tcaaaaatgataaaatgtgaaggagaacactgtcgggtaagtcactttatctgtcttcactttcttc 55967161  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 82 - 123
Target Start/End: Complemental strand, 35974098 - 35974057
Alignment:
Q  82 tggaatacgtttccaaagatgtttccatctggtggacaaaat 123  Q
    ||||||||||||||| |||||| ||||||| |||||||||||    
T  35974098 tggaatacgtttccagagatgtctccatcttgtggacaaaat 35974057  T

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Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 87 - 140
Target Start/End: Original strand, 36656422 - 36656475
Alignment:
Q  87 tacgtttccaaagatgtttccatctggtggacaaaatgcaagttcgaacagcgt 140  Q
    |||||||||| ||||||||||||||  ||||||| | ||||||||| |||||||    
T  36656422 tacgtttccagagatgtttccatctcttggacaacacgcaagttcggacagcgt 36656475  T

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Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 83 - 135
Target Start/End: Complemental strand, 18359284 - 18359232
Alignment:
Q  83 ggaatacgtttccaaagatgtttccatctggtggacaaaatgcaagttcgaac 135  Q
    |||||| ||||||||||||| ||||| ||  |||||||||||| |||||||||    
T  18359284 ggaatatgtttccaaagatgcttccaccttttggacaaaatgccagttcgaac 18359232  T

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Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 83 - 135
Target Start/End: Original strand, 36603644 - 36603696
Alignment:
Q  83 ggaatacgtttccaaagatgtttccatctggtggacaaaatgcaagttcgaac 135  Q
    |||||| ||||||||||||| ||||| ||  |||||||||||| |||||||||    
T  36603644 ggaatatgtttccaaagatgcttccaccttttggacaaaatgccagttcgaac 36603696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 82 - 134
Target Start/End: Original strand, 38863151 - 38863203
Alignment:
Q  82 tggaatacgtttccaaagatgtttccatctggtggacaaaatgcaagttcgaa 134  Q
    ||||||||||||| | ||||||||||||||  |||||||||  ||||||||||    
T  38863151 tggaatacgtttcgagagatgtttccatctcttggacaaaacacaagttcgaa 38863203  T

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