View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3308_high_44 (Length: 250)

Name: NF3308_high_44
Description: NF3308
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3308_high_44
NF3308_high_44
[»] scaffold0170 (2 HSPs)
scaffold0170 (16-145)||(7212-7341)
scaffold0170 (142-250)||(7399-7507)
[»] chr7 (1 HSPs)
chr7 (76-126)||(24361556-24361606)
[»] chr6 (1 HSPs)
chr6 (16-59)||(13490193-13490236)
[»] chr5 (2 HSPs)
chr5 (76-126)||(42544628-42544679)
chr5 (76-126)||(9160950-9160999)
[»] chr3 (2 HSPs)
chr3 (16-59)||(17919199-17919242)
chr3 (16-59)||(21186747-21186790)
[»] chr4 (1 HSPs)
chr4 (60-113)||(41325079-41325132)
[»] scaffold0991 (1 HSPs)
scaffold0991 (21-61)||(400-440)
[»] chr1 (1 HSPs)
chr1 (76-116)||(29389013-29389053)


Alignment Details
Target: scaffold0170 (Bit Score: 106; Significance: 4e-53; HSPs: 2)
Name: scaffold0170
Description:

Target: scaffold0170; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 16 - 145
Target Start/End: Original strand, 7212 - 7341
Alignment:
Q  16 atggataaaaacagagaaaagtggtgaaagtttggggtatgacacaaccgaattaagtcgaaccgcatgcttttttatctcacggttaaaatgacttttt 115  Q
    |||| |||||||||||||||||||| ||| ||| |||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||    
T  7212 atgggtaaaaacagagaaaagtggtcaaaatttagggtatgacacaaccgaactaagtcgaaccgcatgcttttgtatctcacggttaaaatgacttttt 7311  T
Q  116 tctcaaaaccgcaccgcgaacatccctact 145  Q
    ||||||||||||||||||||||||||||||    
T  7312 tctcaaaaccgcaccgcgaacatccctact 7341  T

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Target: scaffold0170; HSP #2
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 142 - 250
Target Start/End: Original strand, 7399 - 7507
Alignment:
Q  142 tactaacttgagcatcggagaacctacaggtacaccaccctcgtcgttccaaacattcaattagcatcaagcttgccacaccatacgtcgttcttctgat 241  Q
    |||| |||||||| ||| |||||||||||||||||||||||| |||||  |||||||||||||||||||||||| |||||||| ||||||||||||||||    
T  7399 tactgacttgagcgtcgaagaacctacaggtacaccaccctcatcgttaaaaacattcaattagcatcaagcttaccacaccagacgtcgttcttctgat 7498  T
Q  242 cgaatcaga 250  Q
    |||||||||    
T  7499 cgaatcaga 7507  T

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Target: chr7 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 76 - 126
Target Start/End: Original strand, 24361556 - 24361606
Alignment:
Q  76 aaccgcatgcttttttatctcacggttaaaatgacttttttctcaaaaccg 126  Q
    |||| |||| ||||||||||||||||| | |||||||||||||||||||||    
T  24361556 aaccacatgtttttttatctcacggtttagatgacttttttctcaaaaccg 24361606  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 16 - 59
Target Start/End: Complemental strand, 13490236 - 13490193
Alignment:
Q  16 atggataaaaacagagaaaagtggtgaaagtttggggtatgaca 59  Q
    ||||||||||| ||||||||||||| ||| ||||||||||||||    
T  13490236 atggataaaaatagagaaaagtggtcaaaatttggggtatgaca 13490193  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 76 - 126
Target Start/End: Complemental strand, 42544679 - 42544628
Alignment:
Q  76 aaccgcatgcttttttatctcacggttaaaatgactttttt-ctcaaaaccg 126  Q
    ||||||||||||||||||||| ||||| | ||||||||||| ||||||||||    
T  42544679 aaccgcatgcttttttatctcgcggtttagatgacttttttgctcaaaaccg 42544628  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 76 - 126
Target Start/End: Complemental strand, 9160999 - 9160950
Alignment:
Q  76 aaccgcatgcttttttatctcacggttaaaatgacttttttctcaaaaccg 126  Q
    ||||||||||||||| ||||| |||||  ||||||||||||||||||||||    
T  9160999 aaccgcatgcttttt-atctcgcggtttgaatgacttttttctcaaaaccg 9160950  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 16 - 59
Target Start/End: Complemental strand, 17919242 - 17919199
Alignment:
Q  16 atggataaaaacagagaaaagtggtgaaagtttggggtatgaca 59  Q
    ||||||||||| ||||||||||||| ||| ||||||||||||||    
T  17919242 atggataaaaatagagaaaagtggtcaaaatttggggtatgaca 17919199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 16 - 59
Target Start/End: Complemental strand, 21186790 - 21186747
Alignment:
Q  16 atggataaaaacagagaaaagtggtgaaagtttggggtatgaca 59  Q
    ||||||||||||||| ||||||||| ||| ||||||||||||||    
T  21186790 atggataaaaacagataaaagtggtcaaaatttggggtatgaca 21186747  T

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Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 60 - 113
Target Start/End: Complemental strand, 41325132 - 41325079
Alignment:
Q  60 caaccgaattaagtcgaaccgcatgcttttttatctcacggttaaaatgacttt 113  Q
    |||||||||||| || |||||||| ||| |||||||| ||||| ||||||||||    
T  41325132 caaccgaattaaatcaaaccgcatacttatttatctcgcggttcaaatgacttt 41325079  T

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Target: scaffold0991 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0991
Description:

Target: scaffold0991; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 61
Target Start/End: Original strand, 400 - 440
Alignment:
Q  21 taaaaacagagaaaagtggtgaaagtttggggtatgacaca 61  Q
    |||||| ||||||||||||| ||| ||||||||||||||||    
T  400 taaaaatagagaaaagtggtcaaaatttggggtatgacaca 440  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 76 - 116
Target Start/End: Complemental strand, 29389053 - 29389013
Alignment:
Q  76 aaccgcatgcttttttatctcacggttaaaatgactttttt 116  Q
    |||||||||||||||||||||||||||   |||||||||||    
T  29389053 aaccgcatgcttttttatctcacggtttggatgactttttt 29389013  T

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