View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3308_high_47 (Length: 249)
Name: NF3308_high_47
Description: NF3308
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3308_high_47 |
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| [»] scaffold0130 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 243; Significance: 1e-135; HSPs: 9)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 1 - 243
Target Start/End: Complemental strand, 11541317 - 11541075
Alignment:
| Q |
1 |
ctatttcctacttcaatgaaatcaatgagatctgaatcagggtattgtttgttggtatagtgtgtaacaacctctaatctctatttacaatccgaaagaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11541317 |
ctatttcctacttcaatgaaatcaatgagatctgaatcagggtattgtttgttggtatagtgtgtaacaacctctaatctctatttacaatccgaaagaa |
11541218 |
T |
|
| Q |
101 |
tgcaatgtgcagctaaagtaatgtgtgaaaacaatgtgaatataatgagaagaagaagccagttttgaagcctggaggagttaggagcttattcctaatg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11541217 |
tgcaatgtgcagctaaagtaatgtgtgaaaacaatgtgaatataatgagaagaagaagccagttttgaagcctggaggagttaggagcttattcctaatg |
11541118 |
T |
|
| Q |
201 |
tgaggatggttgactgattcttttgttagtccacttcatctct |
243 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11541117 |
tgaggatggttgactgattcttttgttagtccacttcatctct |
11541075 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 1 - 243
Target Start/End: Complemental strand, 34613864 - 34613622
Alignment:
| Q |
1 |
ctatttcctacttcaatgaaatcaatgagatctgaatcagggtattgtttgttggtatagtgtgtaacaacctctaatctctatttacaatccgaaagaa |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
34613864 |
ctatttcctacttcaatgaaatcaatgagatctgaatcagggtattgtttgttggtacagtgtgtaacaacctctaatctctatttacaatccgaaagaa |
34613765 |
T |
|
| Q |
101 |
tgcaatgtgcagctaaagtaatgtgtgaaaacaatgtgaatataatgagaagaagaagccagttttgaagcctggaggagttaggagcttattcctaatg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
34613764 |
tgcaatgtgcagctaaagtaatgtgtgaaaacaatgtgaatataatgagaagaagaagccagttttgaagcctgaaggagttaggagcttattcctaatg |
34613665 |
T |
|
| Q |
201 |
tgaggatggttgactgattcttttgttagtccacttcatctct |
243 |
Q |
| |
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||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
34613664 |
tgaggatggttgactgattctttagttagtccacttcatctct |
34613622 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 22 - 243
Target Start/End: Complemental strand, 34600389 - 34600168
Alignment:
| Q |
22 |
tcaatgagatctgaatcagggtattgtttgttggtatagtgtgtaacaacctctaatctctatttacaatccgaaagaatgcaatgtgcagctaaagtaa |
121 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34600389 |
tcaatgagatctgaatcagggtattgtttgttggtatagtgtgtaacaacctctaatctctatttacaatccgaaagaatgcaatgtgcagctaaagtaa |
34600290 |
T |
|
| Q |
122 |
tgtgtgaaaacaatgtgaatataatgagaagaagaagccagttttgaagcctggaggagttaggagcttattcctaatgtgaggatggttgactgattct |
221 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34600289 |
tgtgtgaaaacaatgtgaatataatgagaagaagaagccagttttgaagcctggaggagttaggagcttattcctaatgtgaggatggttgactgattct |
34600190 |
T |
|
| Q |
222 |
tttgttagtccacttcatctct |
243 |
Q |
| |
|
|||||||||||||||||||||| |
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| T |
34600189 |
tttgttagtccacttcatctct |
34600168 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 22 - 243
Target Start/End: Complemental strand, 34626923 - 34626702
Alignment:
| Q |
22 |
tcaatgagatctgaatcagggtattgtttgttggtatagtgtgtaacaacctctaatctctatttacaatccgaaagaatgcaatgtgcagctaaagtaa |
121 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34626923 |
tcaatgagatctgaatcagggtattgtttgttggtatagtgtgtaacaacctctaatctctatttacaatccgaaagaatgcaatgtgcagctaaagtaa |
34626824 |
T |
|
| Q |
122 |
tgtgtgaaaacaatgtgaatataatgagaagaagaagccagttttgaagcctggaggagttaggagcttattcctaatgtgaggatggttgactgattct |
221 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34626823 |
tgtgtgaaaacaatgtgaatataatgagaagaagaagccagttttgaagcctggaggagttaggagcttattcctaatgtgaggatggttgactgattct |
34626724 |
T |
|
| Q |
222 |
tttgttagtccacttcatctct |
243 |
Q |
| |
|
|||||||||||||||||||||| |
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| T |
34626723 |
tttgttagtccacttcatctct |
34626702 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 22 - 243
Target Start/End: Complemental strand, 34757026 - 34756805
Alignment:
| Q |
22 |
tcaatgagatctgaatcagggtattgtttgttggtatagtgtgtaacaacctctaatctctatttacaatccgaaagaatgcaatgtgcagctaaagtaa |
121 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34757026 |
tcaatgagatctgaatcagggtattgtttgttggtatagtgtgtaacaacctctaatctctatttacaatccgaaagaatgcaatgtgcagctaaagtaa |
34756927 |
T |
|
| Q |
122 |
tgtgtgaaaacaatgtgaatataatgagaagaagaagccagttttgaagcctggaggagttaggagcttattcctaatgtgaggatggttgactgattct |
221 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34756926 |
tgtgtgaaaacaatgtgaatataatgagaagaagaagccagttttgaagcctggaggagttaggagcttattcctaatgtgaggatggttgactgattct |
34756827 |
T |
|
| Q |
222 |
tttgttagtccacttcatctct |
243 |
Q |
| |
|
|||||||||||||||||||||| |
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| T |
34756826 |
tttgttagtccacttcatctct |
34756805 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 4 - 243
Target Start/End: Complemental strand, 34740510 - 34740272
Alignment:
| Q |
4 |
tttcctacttcaatgaaatcaatgagatctgaatcagggtattgtttgttggtatagtgtgtaacaacctctaatctctatttacaatccgaaagaatgc |
103 |
Q |
| |
|
|||||||||| ||||||| |||||||||| ||||||||||||||||||||||| ||||| ||| |||||||| ||||||||||||||| |||||||||| |
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| T |
34740510 |
tttcctactttaatgaaaccaatgagatcagaatcagggtattgtttgttggtctagtgcataataacctcta-tctctatttacaatctgaaagaatgc |
34740412 |
T |
|
| Q |
104 |
aatgtgcagctaaagtaatgtgtgaaaacaatgtgaatataatgagaagaagaagccagttttgaagcctg-gaggagttaggagcttattcctaatgtg |
202 |
Q |
| |
|
|||||||||| ||| |||| |||||||||||||||| || ||||||||||||||||||| ||||||||||| |||||||||||| ||||||||||| ||| |
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|
| T |
34740411 |
aatgtgcagccaaaataatatgtgaaaacaatgtgagtagaatgagaagaagaagccag-tttgaagcctgagaggagttaggaacttattcctaaagtg |
34740313 |
T |
|
| Q |
203 |
aggatggttgactgattcttttgttagtccacttcatctct |
243 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||| |
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|
| T |
34740312 |
aggatggttggctgattcttttgttagtccacttcatctct |
34740272 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 4 - 117
Target Start/End: Complemental strand, 11547784 - 11547672
Alignment:
| Q |
4 |
tttcctacttcaatgaaatcaatgagatctgaatcagggtattgtttgttggtatagtgtgtaacaacctctaatctctatttacaatccgaaagaatgc |
103 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||| ||||||| | || ||||||| | | ||||||| ||||||| |||||||||||||||||| |
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|
| T |
11547784 |
tttcctacttcaatgaaatcaatgagatatgaatcaatgtattgtctcttagtatagtacatcatgacctcta-tctctatgtacaatccgaaagaatgc |
11547686 |
T |
|
| Q |
104 |
aatgtgcagctaaa |
117 |
Q |
| |
|
|||||||||||||| |
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|
| T |
11547685 |
aatgtgcagctaaa |
11547672 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 22 - 110
Target Start/End: Complemental strand, 34741149 - 34741062
Alignment:
| Q |
22 |
tcaatgagatctgaatcagggtattgtttgttggtatagtgtgtaacaacctctaatctctatttacaatccgaaagaatgcaatgtgc |
110 |
Q |
| |
|
||||| |||||||||||| ||| | ||| ||||||||||| || ||||||||| ||||||| ||||||| |||| |||||||||||| |
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|
| T |
34741149 |
tcaattagatctgaatcaaggtgctttttattggtatagtgcatagcaacctcta-tctctatgtacaatctgaaataatgcaatgtgc |
34741062 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 86 - 117
Target Start/End: Complemental strand, 34761877 - 34761846
Alignment:
| Q |
86 |
tacaatccgaaagaatgcaatgtgcagctaaa |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
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|
| T |
34761877 |
tacaatccgaaagaatgcaatgtgcagctaaa |
34761846 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0130 (Bit Score: 88; Significance: 2e-42; HSPs: 1)
Name: scaffold0130
Description:
Target: scaffold0130; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 1 - 132
Target Start/End: Complemental strand, 14563 - 14433
Alignment:
| Q |
1 |
ctatttcctacttcaatgaaatcaatgagatctgaatcagggtattgtttgttggtatagtgtgtaacaacctctaatctctatttacaatccgaaagaa |
100 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||| | ||| ||||||| |||||||||||||||||||||||| |
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| T |
14563 |
ctatttcctactttaatgaaatcaatgagatctgaattagggtattgtttgttggtatagggcataataacctct-atctctatttacaatccgaaagaa |
14465 |
T |
|
| Q |
101 |
tgcaatgtgcagctaaagtaatgtgtgaaaac |
132 |
Q |
| |
|
||||||||| ||||||| |||| ||||||||| |
|
|
| T |
14464 |
tgcaatgtgtagctaaaataatatgtgaaaac |
14433 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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