View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3308_high_54 (Length: 240)
Name: NF3308_high_54
Description: NF3308
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3308_high_54 |
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| [»] chr7 (1 HSPs) |
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| [»] chr6 (1 HSPs) |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 21 - 240
Target Start/End: Complemental strand, 37912639 - 37912420
Alignment:
| Q |
21 |
gactcttatccaacctgatggatcttcgtaacaacacccaaagtttgaagagaaaactcgattggactgaagaagatgaagtagaagaagtaacaaccaa |
120 |
Q |
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| T |
37912639 |
gactcttatccaacctgatggatcttcgtaacaacacccaaagtttgaagagaaaactcgattggactgaagaagatgaagtagaagaagtaacaaccaa |
37912540 |
T |
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| Q |
121 |
acctcgtcgtttagatcttcctactgatatttccaatcgtattcatcttctcaaatcctctttttcatcttctcgttcagatcgttcttccgctaattgt |
220 |
Q |
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| T |
37912539 |
acctcgtcgtttagatcttcccactgatatttccaatcgtattcatcttctcaaatcctctttttcatcttcttgttcagatcgttcttctgctaattgt |
37912440 |
T |
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| Q |
221 |
gctctctttgtcctttccga |
240 |
Q |
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| T |
37912439 |
gctctctttgtcctttccga |
37912420 |
T |
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Target: chr6 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 161 - 240
Target Start/End: Complemental strand, 26464210 - 26464131
Alignment:
| Q |
161 |
attcatcttctcaaatcctctttttcatcttctcgttcagatcgttcttccgctaattgtgctctctttgtcctttccga |
240 |
Q |
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|||||| ||||||||||| ||||||| ||||||| |||| || ||||||||||||||||||||||||| ||||| ||||| |
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| T |
26464210 |
attcattttctcaaatccactttttcgtcttctccttcaaattgttcttccgctaattgtgctctcttcgtcctctccga |
26464131 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 161 - 240
Target Start/End: Complemental strand, 31197946 - 31197867
Alignment:
| Q |
161 |
attcatcttctcaaatcctctttttcatcttctcgttcagatcgttcttccgctaattgtgctctctttgtcctttccga |
240 |
Q |
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|||||||||||||||||| |||||| ||||||| |||| | ||||||||||||||||||||||||| ||||| ||||| |
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| T |
31197946 |
attcatcttctcaaatccgcttttttgtcttctccttcaaaccgttcttccgctaattgtgctctctccgtcctctccga |
31197867 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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