View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3308_high_57 (Length: 238)
Name: NF3308_high_57
Description: NF3308
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3308_high_57 |
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| [»] scaffold0130 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 213; Significance: 1e-117; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 11541488 - 11541708
Alignment:
| Q |
1 |
ttgcttgatcttcccaaactaggatttcaaccttacacattttggaagcaaacaaaacgatctagcaatatatcatcatatcagagtatctacatttgag |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11541488 |
ttgcttgatcttcccaaactaggatttcaaccttacacattttggaagcaaacaaaacgatctagcaatatatcatcatatcagagtatctacatttgag |
11541587 |
T |
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| Q |
101 |
tgctttttaccaacactaccaataatctgcacaggaacatccttctttttattctattcaaattgttgttcacatatgttagttgcacattgcaatcatt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
11541588 |
tgctttttaccaacactaccaataatctgcacaggaacatccttcttcttattctattcaaattgttgttcacatatgttagttgcacattgcattcatt |
11541687 |
T |
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| Q |
201 |
cagattgtacatagagataaa |
221 |
Q |
| |
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||||||||||||||||||||| |
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| T |
11541688 |
cagattgtacatagagataaa |
11541708 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 34614034 - 34614253
Alignment:
| Q |
1 |
ttgcttgatcttcccaaactaggatttcaaccttacacattttggaagcaaacaaaacgatctagcaatatatcatcatatcagagtatctacatttgag |
100 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34614034 |
ttgcttggtcttcccaaactaggatttcaaccttacacattttggaagcaaacaaaacgatctagcaatatatcatcatatcagagtatctacatttgag |
34614133 |
T |
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| Q |
101 |
tgctttttaccaacactaccaataatctgcacaggaacatccttctttttattctattcaaattgttgttcacatatgttagttgcacattgcaatcatt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
34614134 |
tgctttttaccaacactaccaataatctgcacaggaacatcc-tcttcttattctattcaaattgttgttcacatatgttagttgcacattgcattcatt |
34614232 |
T |
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| Q |
201 |
cagattgtacatagagataaa |
221 |
Q |
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||||||||||||||||||||| |
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| T |
34614233 |
cagattgtacatagagataaa |
34614253 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 5 - 218
Target Start/End: Original strand, 34741999 - 34742217
Alignment:
| Q |
5 |
ttgatcttcccaaactaggatttcaaccttacacatttt-ggaagcaaacaaaa--cgatctagcaatatatcatcatatcagag--tatctacatttga |
99 |
Q |
| |
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||||||||||||||| ||| || ||||||||||||||| || ||||||||||| | || || ||||||||||||| || |||| ||||||||||||| |
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| T |
34741999 |
ttgatcttcccaaacatggagttgaaccttacacatttttggcagcaaacaaaaaacaatttaacaatatatcatcagattagagagtatctacatttga |
34742098 |
T |
|
| Q |
100 |
gtgctttttaccaacactaccaataatctgcacaggaacatccttctttttattctattcaaattgttgttcacatatgttagttgcacattgcaatcat |
199 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
34742099 |
gtactttttaccaacactaccaataatctgcacaggaacatccttcttcttattctattcaaattgttgttcacatatgttagttgcacattgcattcat |
34742198 |
T |
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| Q |
200 |
tcagattgtacatagagat |
218 |
Q |
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||||||||||||||||||| |
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| T |
34742199 |
tcagattgtacatagagat |
34742217 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 5 - 126
Target Start/End: Original strand, 34740908 - 34741029
Alignment:
| Q |
5 |
ttgatcttcccaaactaggatttcaaccttacacattttggaagcaaacaaaacgatctagcaatatatcatcatatcagagtatctacatttgagtgct |
104 |
Q |
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||||||||||||||| |||||||||||||| |||||||| |||||||||||| ||||||| |||||||| || ||||||||| |||||||||||| || |
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| T |
34740908 |
ttgatcttcccaaacatggatttcaaccttatgcattttggtagcaaacaaaacaatctagcgatatatcaccagatcagagtaactacatttgagtact |
34741007 |
T |
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| Q |
105 |
ttttaccaacactaccaataat |
126 |
Q |
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||||||||||||||| |||||| |
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| T |
34741008 |
ttttaccaacactacaaataat |
34741029 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 82 - 136
Target Start/End: Original strand, 34741900 - 34741954
Alignment:
| Q |
82 |
cagagtatctacatttgagtgctttttaccaacactaccaataatctgcacagga |
136 |
Q |
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||||||||||||||||||||| || || ||||||||| |||||||| ||||||| |
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| T |
34741900 |
cagagtatctacatttgagtgtttgttttcaacactacgaataatctccacagga |
34741954 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 80 - 133
Target Start/End: Original strand, 34757270 - 34757324
Alignment:
| Q |
80 |
atcagagtatctacatttgagtgc-tttttaccaacactaccaataatctgcaca |
133 |
Q |
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||||||||||||||||||| | | ||||||||||||||||||||||||| |||| |
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| T |
34757270 |
atcagagtatctacatttgtctacatttttaccaacactaccaataatctccaca |
34757324 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0130 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: scaffold0130
Description:
Target: scaffold0130; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 19361 - 19418
Alignment:
| Q |
1 |
ttgcttgatcttcccaaactaggatttcaaccttacacattttggaagcaaacaaaac |
58 |
Q |
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||||||||||||||||||| |||||||||||||||||||||| || |||| ||||||| |
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| T |
19361 |
ttgcttgatcttcccaaacaaggatttcaaccttacacatttgggcagcatacaaaac |
19418 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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