View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3308_high_67 (Length: 230)
Name: NF3308_high_67
Description: NF3308
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3308_high_67 |
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Alignment Details
Target: chr2 (Bit Score: 150; Significance: 2e-79; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 13 - 166
Target Start/End: Original strand, 9606061 - 9606214
Alignment:
| Q |
13 |
agatgaagatgatgattttgggtgtttaaggttcatgttgtttaactcatatgatgaagatgggtctgaaaaatatgatgaagttgttgaagaacgtgaa |
112 |
Q |
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| T |
9606061 |
agatgaagatgatgattttgggtgtttaaggttcatgttgtttaactcatatgatgaagatgggtctgaaaaatgtgatgaagttgttgaagaacgtgaa |
9606160 |
T |
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| Q |
113 |
tcgtaggaactgtatcttgaagagggtttcttagaaaatgaaaacgccatttgc |
166 |
Q |
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| T |
9606161 |
tcgtaggaactgtatcttgaagagggtttcttagaaaatgaaaacgccatttgc |
9606214 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 96 - 145
Target Start/End: Original strand, 11429309 - 11429358
Alignment:
| Q |
96 |
ttgttgaagaacgtgaatcgtaggaactgtatcttgaagagggtttctta |
145 |
Q |
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| T |
11429309 |
ttgttgaagaacgtgaatcgtaggaactgtatcatgaagagggtttctta |
11429358 |
T |
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