View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3308_high_68 (Length: 229)
Name: NF3308_high_68
Description: NF3308
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3308_high_68 |
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| [»] chr3 (3 HSPs) |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 188; Significance: 1e-102; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 38444300 - 38444528
Alignment:
| Q |
1 |
gggggattggagattgatgccgatataagttttcacaatttgttgtttgtgtgtgggtttcattataagctcttgattttatattttcaaattaaggcat |
100 |
Q |
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| T |
38444300 |
ggggggttggagattgatgccgatataagttttcacaatttgttgtttgtgtgtgggtttcattataagctcttgattttatattttcaaattaaggcat |
38444399 |
T |
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| Q |
101 |
aaacactctaatgttcttatgacactagaaaacactcgttattataagctctaaatctgcagaatttaatgtgaatattaaattagaagaataaattaga |
200 |
Q |
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| T |
38444400 |
aaacactctaatgttcctatgacactagaaaacacttgttattataagctctaaatctgcagaattcaatgtgaatattaaattagaagaataaattaga |
38444499 |
T |
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| Q |
201 |
ttgnnnnnnnccactttcatgtataaatc |
229 |
Q |
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||| |||||||||||||| |||| |
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| T |
38444500 |
ttgaaaaaaaccactttcatgtattaatc |
38444528 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 30 - 194
Target Start/End: Original strand, 4234121 - 4234285
Alignment:
| Q |
30 |
ttttcacaatttgttgtttgtgtgtgggtttcattataagctcttgattttatattttcaaattaaggcataaacactctaatgttcttatgacactaga |
129 |
Q |
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|||||| |||||||| ||||||| | |||||||||||||||||||||||||||||| ||||||| |||| |||||||||||||||| |||||||||| |
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| T |
4234121 |
ttttcagaatttgttttttgtgtatccgtttcattataagctcttgattttatatttagtaattaagacatagacactctaatgttcttgtgacactaga |
4234220 |
T |
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| Q |
130 |
aaacactcgttattataagctctaaatctgcagaatttaatgtgaatattaaattagaagaataa |
194 |
Q |
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| T |
4234221 |
aaacactccttattatatgctctaaatttgctgaattcaatttgaatattaaattagaagaataa |
4234285 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 73 - 194
Target Start/End: Original strand, 4242097 - 4242218
Alignment:
| Q |
73 |
ttgattttatattttcaaattaaggcataaacactctaatgttcttatgacactagaaaacactcgttattataagctctaaatctgcagaatttaatgt |
172 |
Q |
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||||||||||||||| ||||||| |||| |||||||||||||||| |||||||||| ||||||| |||||||| ||||||||| ||| ||||| ||| | |
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| T |
4242097 |
ttgattttatattttgtaattaagacatagacactctaatgttcttgtgacactagacaacactccttattatatgctctaaatttgctgaattcaattt |
4242196 |
T |
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| Q |
173 |
gaatattaaattagaagaataa |
194 |
Q |
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| T |
4242197 |
gaatattaaattagaagaataa |
4242218 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 179; Significance: 9e-97; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 179; E-Value: 9e-97
Query Start/End: Original strand, 18 - 229
Target Start/End: Complemental strand, 2658639 - 2658428
Alignment:
| Q |
18 |
tgccgatataagttttcacaatttgttgtttgtgtgtgggtttcattataagctcttgattttatattttcaaattaaggcataaacactctaatgttct |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
2658639 |
tgccgatataagttttcacaatttgttgtttgtgtgtgggtttcattataagctcttgattttatattttcaaattaaggcataaacactctaatgtttt |
2658540 |
T |
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| Q |
118 |
tatgacactagaaaacactcgttattataagctctaaatctgcagaatttaatgtgaatattaaattagaagaataaattagattgnnnnnnnccacttt |
217 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||| |
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| T |
2658539 |
tatgacactagaaaacactcgttattataagttctaaatctgcagaatttaatgtgaatattaaattaaaagaataaattagattgaaaaaaaccacttt |
2658440 |
T |
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| Q |
218 |
catgtataaatc |
229 |
Q |
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| T |
2658439 |
catgtataaatc |
2658428 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 127; Significance: 1e-65; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 1 - 143
Target Start/End: Complemental strand, 42837175 - 42837033
Alignment:
| Q |
1 |
gggggattggagattgatgccgatataagttttcacaatttgttgtttgtgtgtgggtttcattataagctcttgattttatattttcaaattaaggcat |
100 |
Q |
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||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42837175 |
ggggggttggagattgatgccaatataagttttcacaatttgttgtttgtgtgtgggtttcattataagctcttgattttatattttcaaattaaggcat |
42837076 |
T |
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| Q |
101 |
aaacactctaatgttcttatgacactagaaaacactcgttatt |
143 |
Q |
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|||||||||||||||||||||||||||||||||| ||| |||| |
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| T |
42837075 |
aaacactctaatgttcttatgacactagaaaacattcgatatt |
42837033 |
T |
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