View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3308_high_8 (Length: 507)
Name: NF3308_high_8
Description: NF3308
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3308_high_8 |
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Alignment Details
Target: chr5 (Bit Score: 333; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 44 - 491
Target Start/End: Original strand, 40519265 - 40519718
Alignment:
| Q |
44 |
tattggcaaatccactatcttaaaattttctttgataatttttgtcggtgtatctatcatttcccaatt-gcttaacctatctattttacaacaaatacg |
142 |
Q |
| |
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||||||||||| |||| ||||||||||||||| ||||||||||||| ||||| ||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
40519265 |
tattggcaaatacactgtcttaaaattttctt-gataatttttgtcactgtatttatcatttcccaatttgcttaacctatctattttacaacaaatacg |
40519363 |
T |
|
| Q |
143 |
aaactattcacaaattaatatggtcaggaacgtaagttctacaaataggacaagatccttgttgtactagccacttgtcaatgcactctaaatgaaaaat |
242 |
Q |
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|
||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40519364 |
aaactattcacgaattaatatggtcaggaacgtaagttctacaaataggacatgatccttgttgtactagccacttgtcaatgcactctaaatgaaaaat |
40519463 |
T |
|
| Q |
243 |
gtggctacattttggaagtattctcaccaattcttcattctcaaaatcctgcaaatcaaaatgacaccctagtacagttatataccagatggccacatca |
342 |
Q |
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|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||| ||||||| |
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| T |
40519464 |
gtggctacattttggaagtaatctcaccaattcttcattctcaaaatcctgcaaatcaaaatgacaccctattacatttatataccagatggtcacatca |
40519563 |
T |
|
| Q |
343 |
acaatttaatgtgacaattattctccatggtctcatgaacaacttcaacatgtcacattcacacttttatgtaaattaacat----attaacattgcgat |
438 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||| |
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| T |
40519564 |
acaatttaatgtgacaattattctccatggtctcatgaacaacttcaacatgtcacattcacacttttatgtaaattaacatattaattaacattgtgat |
40519663 |
T |
|
| Q |
439 |
gactttgtattcgaatttttattt---tcatattagcctcttgcattgttagtttt |
491 |
Q |
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||||||||||| | |||||| ||| | |||||| |||| ||||||||||||||| |
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|
| T |
40519664 |
gactttgtattgggatttttttttttgttatattatcctc-tgcattgttagtttt |
40519718 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 155; E-Value: 5e-82
Query Start/End: Original strand, 305 - 491
Target Start/End: Complemental strand, 41782118 - 41781932
Alignment:
| Q |
305 |
gacaccctagtacagttatataccagatggccacatcaacaatttaatgtgacaattattctccatggtctcatgaacaacttcaacatgtcacattcac |
404 |
Q |
| |
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||||||||| |||| |||||||||| ||||||| ||||||| |||||||||||||||||| ||||||||||||||| |||||||||||||||||||||| |
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| T |
41782118 |
gacaccctaatacatttatataccaaatggccatatcaacagtttaatgtgacaattatttcccatggtctcatgaagaacttcaacatgtcacattcac |
41782019 |
T |
|
| Q |
405 |
acttttatgtaaattaacatattaacattgcgatgactttgtattcgaatttttattttcatattagcctcttgcattgttagtttt |
491 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41782018 |
acttttatgtaaattaacatattaacattgcgatgactttgtattcgaatttttattttcatattagcctcttgcattgttagtttt |
41781932 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 150 - 298
Target Start/End: Original strand, 40508315 - 40508463
Alignment:
| Q |
150 |
tcacaaattaatatggtcaggaacgtaagttctacaaataggacaagatccttgttgtactagccacttgtcaatgcactctaaatgaaaaatgtggcta |
249 |
Q |
| |
|
|||| ||||||| || ||| ||| |||||||||||||| ||||| ||||||||||| | |||||||||||||||||| |||||||||||||| |||||| |
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| T |
40508315 |
tcacgaattaatgtgatcaacaacataagttctacaaatgggacatgatccttgttggattagccacttgtcaatgcattctaaatgaaaaatatggcta |
40508414 |
T |
|
| Q |
250 |
cattttggaagtattctcaccaattcttcattctcaaaatcctgcaaat |
298 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
40508415 |
cattttggaagtattctgaccaattcttcattctcaaaatcctgcaaat |
40508463 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 315 - 434
Target Start/End: Original strand, 40510566 - 40510685
Alignment:
| Q |
315 |
tacagttatataccagatggccacatcaacaatttaatgtgacaattattctccatggtctcatgaacaacttcaacatgtcacattcacacttttatgt |
414 |
Q |
| |
|
|||| |||| |||| ||||| ||||||||||||||||||||||||||||| |||||||||||| |||| || | ||||||||||||||||||||| |
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| T |
40510566 |
tacacttatctacccgatggtcacatcaacaatttaatgtgacaattatttcccatggtctcatcgacaattttggtacgtcacattcacacttttatgt |
40510665 |
T |
|
| Q |
415 |
aaattaacatattaacattg |
434 |
Q |
| |
|
|| |||||| |||||||||| |
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|
| T |
40510666 |
aatttaacacattaacattg |
40510685 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 125; Significance: 4e-64; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 303 - 491
Target Start/End: Original strand, 18163560 - 18163747
Alignment:
| Q |
303 |
atgacaccctagtacagttatataccagatggccacatcaacaatttaatgtgacaattattctccatggtctcatgaacaacttcaacatgtcacattc |
402 |
Q |
| |
|
||||||||||| || | ||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||| |
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| T |
18163560 |
atgacaccctaataaatttatataccagatggccacatcaacaatttaatgtgacaatgattcctcatggtctcatgaacaacttcaacatgtcacattc |
18163659 |
T |
|
| Q |
403 |
acacttttatgtaaattaacatattaacattgcgatgactttgtattcgaatttttattttcatattagcctcttgcattgttagtttt |
491 |
Q |
| |
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||||||||||||||||||||||||||||||| ||||||||||| || | | |||| | |||||||||||||| ||||||||||||||| |
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|
| T |
18163660 |
acacttttatgtaaattaacatattaacattttgatgactttgttttaggacttttttgttcatattagcctc-tgcattgttagtttt |
18163747 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 49 - 108
Target Start/End: Original strand, 14131248 - 14131306
Alignment:
| Q |
49 |
gcaaatccactatcttaaaattttctttgataatttttgtcggtgtatctatcatttccc |
108 |
Q |
| |
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|||||| |||||||||||||||||| || |||| ||||||| ||||||||||||||||| |
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|
| T |
14131248 |
gcaaatacactatcttaaaattttc-ttcataaattttgtcactgtatctatcatttccc |
14131306 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 49 - 108
Target Start/End: Original strand, 31264850 - 31264908
Alignment:
| Q |
49 |
gcaaatccactatcttaaaattttctttgataatttttgtcggtgtatctatcatttccc |
108 |
Q |
| |
|
|||||| |||||||||||||||| |||||||| ||||||| ||||||||||||||||| |
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|
| T |
31264850 |
gcaaatacactatcttaaaatttg-tttgataaattttgtcactgtatctatcatttccc |
31264908 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 51 - 108
Target Start/End: Original strand, 20143062 - 20143118
Alignment:
| Q |
51 |
aaatccactatcttaaaattttctttgataatttttgtcggtgtatctatcatttccc |
108 |
Q |
| |
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|||| ||||||||| |||||||||| ||||| ||||||| ||||||||||||||||| |
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|
| T |
20143062 |
aaatacactatcttgaaattttctt-gataaattttgtcactgtatctatcatttccc |
20143118 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 50 - 108
Target Start/End: Original strand, 34713594 - 34713651
Alignment:
| Q |
50 |
caaatccactatcttaaaattttctttgataatttttgtcggtgtatctatcatttccc |
108 |
Q |
| |
|
||||| |||||||||||||||||| ||||||| ||||||| ||||||||||||||||| |
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|
| T |
34713594 |
caaatacactatcttaaaattttc-ttgataaattttgtcactgtatctatcatttccc |
34713651 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 50 - 109
Target Start/End: Original strand, 16528659 - 16528717
Alignment:
| Q |
50 |
caaatccactatcttaaaattttctttgataatttttgtcggtgtatctatcatttccca |
109 |
Q |
| |
|
||||| |||||||||||||||||| |||||| | |||||| |||||||||||||||||| |
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|
| T |
16528659 |
caaatacactatcttaaaattttc-ttgatacatgttgtcgctgtatctatcatttccca |
16528717 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 50 - 108
Target Start/End: Original strand, 19663375 - 19663432
Alignment:
| Q |
50 |
caaatccactatcttaaaattttctttgataatttttgtcggtgtatctatcatttccc |
108 |
Q |
| |
|
||||| |||| ||||||||||||||| ||||| ||||||| ||||||||||||||||| |
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|
| T |
19663375 |
caaatacactctcttaaaattttctt-gataaattttgtcactgtatctatcatttccc |
19663432 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 42 - 111
Target Start/End: Original strand, 20125675 - 20125743
Alignment:
| Q |
42 |
ggtattggcaaatccactatcttaaaattttctttgataatttttgtcggtgtatctatcatttcccaat |
111 |
Q |
| |
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|||||| |||||| |||| |||| |||||||||| ||||| |||||| |||||||||||||||||||| |
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| T |
20125675 |
ggtattagcaaatacactgtcttcaaattttctt-gataaaatttgtcattgtatctatcatttcccaat |
20125743 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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