View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3308_low_1 (Length: 814)
Name: NF3308_low_1
Description: NF3308
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3308_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 364; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 1 - 403
Target Start/End: Complemental strand, 51901846 - 51901436
Alignment:
| Q |
1 |
tcatcacaaatgagaagctaaaaacgctacatcattatacccgttgaagcatactgacttgaaaaggctgttaattttcttagggttagtaggtgatgac |
100 |
Q |
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| T |
51901846 |
tcatcacaaatgagaagctaaaaacgctacatcattatacccgttgaagcatactgacttgaaaaggctgttaattttcttagggttagtaggtgatgac |
51901747 |
T |
|
| Q |
101 |
tagtcagtgtcaatggacttacttactcccgcatctcaagactattttgcatttctgctgtagattcattattatcatattgaccaaatagaataactac |
200 |
Q |
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| T |
51901746 |
tagtcagtgtcaatggaattacttactcccgcatctcaagactattttgcatttctgctgtagattcattattatcatattgaccaaatagaataactac |
51901647 |
T |
|
| Q |
201 |
taaagaaacaatagaattaaatggcattcattc---------atgtgagaatctcaaaacactgcttgaaccgaggacattcttgtttaacataacacaa |
291 |
Q |
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| T |
51901646 |
taaagaaacaatagaatt-aatggcattcattcattcgaagaatgtgagaatctcaaaacactgcttgaaccgaggacattcttgtttaacataacacaa |
51901548 |
T |
|
| Q |
292 |
ataactgaataagatagcaaaacataaatatcattctcctcattaatttggtttgatacatcatcattcatcacaaacatgacaaggaattaagactaca |
391 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51901547 |
ataactgaataagatatcaaaacataaatatcattctcctcattaatttggtttgatacatcatcattcatcacaaacatgacaaggaattaagactaca |
51901448 |
T |
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| Q |
392 |
tattacataatc |
403 |
Q |
| |
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| T |
51901447 |
tattacataatc |
51901436 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 442 - 798
Target Start/End: Complemental strand, 51901397 - 51901038
Alignment:
| Q |
442 |
gtgaccatgtagctagctatagtttttcatttaatttcagcataacatattgtgatgtaaatggtgcaatgtaacacagc---ttgttcaacaaaagaag |
538 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||| |
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| T |
51901397 |
gtgaccatgtagctagctatagtttttcatttaatttcagcataacatattgtgatgtaaatggagcaatgtaacacagcagcttgttcaacaaaagaag |
51901298 |
T |
|
| Q |
539 |
ccaaagttgccatcgtcaaagttgagtgaataactaaaagggtcatagttgaaannnnnnnngttcttgttcttcattatttgcctcttaaaatcagccc |
638 |
Q |
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| T |
51901297 |
ccaaagttgccatcgtcaaagttgagtgaataactaaaagggtcatagttgaaatttttgttgttcttgttcttcattatttgcctcttaaaatcagccc |
51901198 |
T |
|
| Q |
639 |
taaccctccaaaacaagctcctcaacttcctcttcccatgcacaaacaccactcgtggctcaaaacagcagcagaacttcattatattcaactaaatttc |
738 |
Q |
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| T |
51901197 |
taaccctccaaaacaagctcctcaactttctcttcccatgcataaacaccactcgtggctcaaaacagcagcagaacttcattatattcaactaaatttc |
51901098 |
T |
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| Q |
739 |
ttgttcacttttcaaaccaaaaagaaaagagagaataaaagatgaagacaaagtgagagc |
798 |
Q |
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| T |
51901097 |
ttgttcacttttcaaaccaaaaagaaaagagagaataaaagatgaagacaaagtgagagc |
51901038 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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