View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3308_low_12 (Length: 491)
Name: NF3308_low_12
Description: NF3308
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3308_low_12 |
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Alignment Details
Target: chr1 (Bit Score: 460; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 460; E-Value: 0
Query Start/End: Original strand, 13 - 472
Target Start/End: Complemental strand, 27623994 - 27623535
Alignment:
| Q |
13 |
aatatgaacatcagcaccacgaccatcaatggttttgaagctattaaaaataagctcttgagacaacttaatcatcatgttacttggaaacacaatccaa |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27623994 |
aatatgaacatcagcaccacgaccatcaatggttttgaagctattaaaaataagctcttgagacaacttaatcatcatgttacttggaaacacaatccaa |
27623895 |
T |
|
| Q |
113 |
agtggttcattttgtataactgcatatcttaaagtaccaggtttaggattcacagcatcattgtctgaggaatctgtgacaatgtaaaatttgccacctt |
212 |
Q |
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| T |
27623894 |
agtggttcattttgtataactgcatatcttaaagtaccaggtttaggattcacagcatcattgtctgaggaatctgtgacaatgtaaaatttgccacctt |
27623795 |
T |
|
| Q |
213 |
ttcctcctttggcattttgtccaaaccctattgcacaatctgctaacctttgacgattgttggcccaatctgtgtcacatttccaacaatcgtctattgg |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27623794 |
ttcctcctttggcattttgtccaaaccctattgcacaatctgctaacctttgacgattgttggcccaatctgtgtcacatttccaacaatcgtctattgg |
27623695 |
T |
|
| Q |
313 |
gtttcctgttatacatgatgttgaaaactctttgtttgatattgatagcatttctcttcttaacattgaaacattcactttcctacaaaataatatgaat |
412 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27623694 |
gtttcctgttatacatgatgttgaaaactctttgtttgatattgatagcatttctcttcttaacattgaaacattcactttcctacaaaataatatgaat |
27623595 |
T |
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| Q |
413 |
tttgttaaacattggagaaatttttagctacatttactaactagccattatagtaaccca |
472 |
Q |
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| T |
27623594 |
tttgttaaacattggagaaatttttagctacatttactaactagccattatagtaaccca |
27623535 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 107; Significance: 2e-53; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 17 - 315
Target Start/End: Original strand, 41365837 - 41366135
Alignment:
| Q |
17 |
tgaacatcagcaccacgaccatcaatggttttgaagctattaaaaataagctcttgagacaacttaatcatcatgttacttggaaacacaatccaaagtg |
116 |
Q |
| |
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||||||||||| ||||| || ||||| || || | |||||||| ||||||||||| || |||||||||||||||||| || ||||| ||||| | || |
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| T |
41365837 |
tgaacatcagctccacgtccgtcaatagtcttataactattaaatataagctcttgcttcagcttaatcatcatgttactagggaacactatccacaatg |
41365936 |
T |
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| Q |
117 |
gttcattttgtataactgcatatcttaaagtaccaggtttaggattcacagcatcattgtctgaggaatctgtgacaatgtaaaatttgccaccttttcc |
216 |
Q |
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||||||||| ||| || |||||||||| ||||| ||||| || | |||||||||| ||||| |||||||| |||| |||||||| ||||||||||| |
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| T |
41365937 |
gttcattttttatcacaccatatcttaatgtacctggttttggggtaacagcatcatcatctgatgaatctgttacaacgtaaaattcaccaccttttcc |
41366036 |
T |
|
| Q |
217 |
tcctttggcattttgtccaaaccctattgcacaatctgctaacctttgacgattgttggcccaatctgtgtcacatttccaacaatcgtctattgggtt |
315 |
Q |
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|||||| |||| || |||||||| ||||||||||| |||||||||||||||||||||| ||| |||| || ||||||||||||||||| || ||||| |
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| T |
41366037 |
tcctttagcatactgaccaaacccgattgcacaatcagctaacctttgacgattgttgggccattctggatcgcatttccaacaatcgtcaatcgggtt |
41366135 |
T |
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