View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3308_low_14 (Length: 449)
Name: NF3308_low_14
Description: NF3308
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3308_low_14 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 387; Significance: 0; HSPs: 18)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 16 - 434
Target Start/End: Complemental strand, 41316447 - 41316029
Alignment:
| Q |
16 |
aattttcctgttggatcttgagaagaacatctactagatcttcatcattgcttgcttccttgtgaatgcttttgtgatcgtcgatgatgtcttgcaatgt |
115 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41316447 |
aattttcctgttgaatcttgagaagaacatctactagatcttcatcattgctttcttccttgtgaatgcttttgtgatcgtcgatgatgtcttgcaatgt |
41316348 |
T |
|
| Q |
116 |
catatcaagctctctgtgaagtttttccattttggtcttcgctctactcaagcattgaagcaatttaatagaaggaaacaaatccacaatacaaacgcct |
215 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41316347 |
catatcaagctctttgtgaagtttttccattttggtcttcgctctactcaagcattgaagcaatttaatagaaggaaacaaatccacaatacaaacgcct |
41316248 |
T |
|
| Q |
216 |
cccaacaaacttgatacttcctctattgctgatctaaacactgcttggtgtttgctccttttcccaaaagccgctcgcgctgttatcccatatgtcgttg |
315 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41316247 |
cccaacaaacttgctacttcctctattgctgatctaaacacttcttggtgtttgctccttttcccaaaagccgctcgcgctgttatcccatatgtcgttg |
41316148 |
T |
|
| Q |
316 |
acaaaatcttctgagtgagattaacaactgatccttcacttacagttattgatttaacaagattcgtcacttcattttctcttatagacctaaatgattg |
415 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||| |||||||||||||||||||||||| |
|
|
| T |
41316147 |
acaaaatcttctgagtgagattaacaactgatccttcacttgcagttattgatttaacaagatttgtcacttcatcttctcttatagacctaaatgattg |
41316048 |
T |
|
| Q |
416 |
gacacgctttgcgcttaat |
434 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
41316047 |
gacacgctttgcgcttaat |
41316029 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 16 - 434
Target Start/End: Complemental strand, 41324516 - 41324098
Alignment:
| Q |
16 |
aattttcctgttggatcttgagaagaacatctactagatcttcatcattgcttgcttccttgtgaatgcttttgtgatcgtcgatgatgtcttgcaatgt |
115 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||| ||| |||||||| ||||||||||||||||||||||||||||||| |||||||||||| | |
|
|
| T |
41324516 |
aattttcctgttgaatcttgagaagaacatctactagatattcttcattgctatcttccttgtgaatgcttttgtgatcgtcgataatgtcttgcaatat |
41324417 |
T |
|
| Q |
116 |
catatcaagctctctgtgaagtttttccattttggtcttcgctctactcaagcattgaagcaatttaatagaaggaaacaaatccacaatacaaacgcct |
215 |
Q |
| |
|
|||||||| |||| ||||||||||||||||||||| |||||| ||||||| ||||||||||||||||||||||||| ||||||| |||||||||| |||| |
|
|
| T |
41324416 |
catatcaatctctttgtgaagtttttccattttggccttcgccctactcacgcattgaagcaatttaatagaaggatacaaatcaacaatacaaatgcct |
41324317 |
T |
|
| Q |
216 |
cccaacaaacttgatacttcctctattgctgatctaaac-actgcttggtgtttgctccttttcccaaaagccgctcgcgctgttatcccatatgtcgtt |
314 |
Q |
| |
|
|||||||||||| || |||||||| ||||||| ||||| | ||| ||||||||||||||||| ||||||||||| |||| |||||||||||||||| || |
|
|
| T |
41324316 |
cccaacaaacttactatttcctctactgctgatttaaacgattgc-tggtgtttgctccttttgccaaaagccgcccgcgttgttatcccatatgtcatt |
41324218 |
T |
|
| Q |
315 |
gacaaaatcttctgagtgagattaacaactgatccttcacttacagttattgatttaacaagattcgtcacttcattttctcttatagacctaaatgatt |
414 |
Q |
| |
|
|| |||||||| |||||||||||||||| ||||||||||||| ||||||||||| || ||||||| | ||||||| ||||||| | ||||||||||||| |
|
|
| T |
41324217 |
gagaaaatcttatgagtgagattaacaattgatccttcacttgcagttattgatgtagcaagatttgatacttcatcttctcttgtggacctaaatgatt |
41324118 |
T |
|
| Q |
415 |
ggacacgctttgcgcttaat |
434 |
Q |
| |
|
||||||||||||| |||||| |
|
|
| T |
41324117 |
ggacacgctttgcacttaat |
41324098 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 16 - 434
Target Start/End: Complemental strand, 41332427 - 41332009
Alignment:
| Q |
16 |
aattttcctgttggatcttgagaagaacatctactagatcttcatcattgcttgcttccttgtgaatgcttttgtgatcgtcgatgatgtcttgcaatgt |
115 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||| | | |
|
|
| T |
41332427 |
aattttcctgttgaatcttgagaagaacatctactagatcttcatcgttgcttgcttccttgtgaatgcttctgtgatcgtcgatgatgtcttgcattat |
41332328 |
T |
|
| Q |
116 |
catatcaagctctctgtgaagtttttccattttggtcttcgctctactcaagcattgaagcaatttaatagaaggaaacaaatccacaatacaaacgcct |
215 |
Q |
| |
|
||||||||||||||| |||| ||||||||||||||||||| | ||||||| ||||||||||| ||||||||||||| ||||||| |||| || ||| |
|
|
| T |
41332327 |
catatcaagctctctatgaattttttccattttggtcttctccctactcatgcattgaagcattttaatagaaggatacaaatctgcaatttcaaatcct |
41332228 |
T |
|
| Q |
216 |
cccaacaaacttgatacttcctctattgctgatctaaacactgcttggtgtttgctccttttcccaaaagccgctcgcgctgttatcccatatgtcgttg |
315 |
Q |
| |
|
|| || | |||||| ||| ||||||||| | ||||| |||||| | | |||||||||||||||| || |||||||||||||||| |||| ||| |
|
|
| T |
41332227 |
cctaatagcaccaatactttctccattgctgatatgaacacatcttggtttctattccttttcccaaaagctgcccgcgctgttatcccatttgtcattg |
41332128 |
T |
|
| Q |
316 |
acaaaatcttctgagtgagattaacaactgatccttcacttacagttattgatttaacaagattcgtcacttcattttctcttatagacctaaatgattg |
415 |
Q |
| |
|
| ||||||||| |||||||||| ||||| |||||||||||| |||||||||||||||||||||| |||||||||| ||||||||| |||||||||||||| |
|
|
| T |
41332127 |
agaaaatcttccgagtgagatttacaaccgatccttcacttgcagttattgatttaacaagatttgtcacttcatcttctcttatggacctaaatgattg |
41332028 |
T |
|
| Q |
416 |
gacacgctttgcgcttaat |
434 |
Q |
| |
|
|||||||||||| |||||| |
|
|
| T |
41332027 |
gacacgctttgcacttaat |
41332009 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 183; E-Value: 8e-99
Query Start/End: Original strand, 16 - 434
Target Start/End: Complemental strand, 41328414 - 41327996
Alignment:
| Q |
16 |
aattttcctgttggatcttgagaagaacatctactagatcttcatcattgcttgcttccttgtgaatgcttttgtgatcgtcgatgatgtcttgcaatgt |
115 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||| | | |
|
|
| T |
41328414 |
aattttcctgttgaatcttgagaagaacatctactagatcttcatcattgcttgcttccttgtgaatacttctgtgatcgtcgatgatgtcttgtgctat |
41328315 |
T |
|
| Q |
116 |
catatcaagctctctgtgaagtttttccattttggtcttcgctctactcaagcattgaagcaatttaatagaaggaaacaaatccacaatacaaacgcct |
215 |
Q |
| |
|
|||||||| |||| | |||||||||||||||||||||||| | ||| ||| |||||||||||||||||||||||| ||||||| |||| || | | |
|
|
| T |
41328314 |
catatcaatctctgtatgaagtttttccattttggtcttctccctagtcatccattgaagcaatttaatagaaggatacaaatctgcaatttcaaatctt |
41328215 |
T |
|
| Q |
216 |
cccaacaaacttgatacttcctctattgctgatctaaacactgcttggtgtttgctccttttcccaaaagccgctcgcgctgttatcccatatgtcgttg |
315 |
Q |
| |
|
|| || | ||||| ||| | ||||| | | ||||| |||||||| | |||||||||||||||| || |||||||||||||||| |||| ||| |
|
|
| T |
41328214 |
cctaatagcaccactactttctccaatgctggtatgaacacatcttggtgtctattccttttcccaaaagctgcccgcgctgttatcccatttgtcattg |
41328115 |
T |
|
| Q |
316 |
acaaaatcttctgagtgagattaacaactgatccttcacttacagttattgatttaacaagattcgtcacttcattttctcttatagacctaaatgattg |
415 |
Q |
| |
|
| ||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||| || | ||| |||| ||||||||| |||||||||||||| |
|
|
| T |
41328114 |
agaaaatcttccgagtgagattaacaactgatccttcacttgcagttattgatttaacaaggtttgacacctcatcttctcttatggacctaaatgattg |
41328015 |
T |
|
| Q |
416 |
gacacgctttgcgcttaat |
434 |
Q |
| |
|
||||||||||| |||||| |
|
|
| T |
41328014 |
tacacgctttgcacttaat |
41327996 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 150; E-Value: 4e-79
Query Start/End: Original strand, 17 - 434
Target Start/End: Original strand, 31188445 - 31188862
Alignment:
| Q |
17 |
attttcctgttggatcttgagaagaacatctactagatcttcatcattgcttgcttccttgtgaatgcttttgtgatcgtcgatgatgtcttgcaatgtc |
116 |
Q |
| |
|
|||||||||||| |||||||||||| ||| |||||||||||||| |||||| |||||||||||||| |||| ||||| ||||||| ||||||||| || |
|
|
| T |
31188445 |
attttcctgttgaatcttgagaagagtatcaactagatcttcatccttgctttcttccttgtgaatgtttttatgatcaacgatgatatcttgcaatatc |
31188544 |
T |
|
| Q |
117 |
atatcaagctctctgtgaagtttttccattttggtcttcgctctactcaagcattgaagcaatttaatagaaggaaacaaatccacaatacaaacgcctc |
216 |
Q |
| |
|
||||||| |||| | ||||| ||||| | ||| |||||||| ||||||| ||||||| || ||||| ||||||| ||| ||| ||||||||| ||| |
|
|
| T |
31188545 |
atatcaatctctttatgaagcttttcaactttcgtcttcgccctactcacccattgaaacattttaacagaaggatacacatcagcaatacaaaattctc |
31188644 |
T |
|
| Q |
217 |
ccaacaaacttgatacttcctctattgctgatctaaacactgcttggtgtttgctccttttcccaaaagccgctcgcgctgttatcccatatgtcgttga |
316 |
Q |
| |
|
||| |||||| | || |||| |||||||||| | || || |||||||||| |||||||||||||| || ||||| | |||||||| ||||| || | |
|
|
| T |
31188645 |
ccagcaaactagctatctcctttattgctgatttgaaagcttcttggtgtttactccttttcccaaacgctgctcgtgtcgttatccctgatgtcattaa |
31188744 |
T |
|
| Q |
317 |
caaaatcttctgagtgagattaacaactgatccttcacttacagttattgatttaacaagattcgtcacttcattttctcttatagacctaaatgattgg |
416 |
Q |
| |
|
|||||||| ||| |||||||||||| ||||||||||||| ||| |||||||||||||||||| | ||| || | |||||||||| ||||||| |||||| |
|
|
| T |
31188745 |
aaaaatcttatgactgagattaacaattgatccttcacttgcagatattgatttaacaagatttgacacctcttcttctcttatatacctaaacgattgg |
31188844 |
T |
|
| Q |
417 |
acacgctttgcgcttaat |
434 |
Q |
| |
|
||||||||||| |||||| |
|
|
| T |
31188845 |
acacgctttgcacttaat |
31188862 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 17 - 434
Target Start/End: Complemental strand, 31225368 - 31224951
Alignment:
| Q |
17 |
attttcctgttggatcttgagaagaacatctactagatcttcatcattgcttgcttccttgtgaatgcttttgtgatcgtcgatgatgtcttgcaatgtc |
116 |
Q |
| |
|
|||||||||||| |||||||||||| ||| |||||||||||||| |||||| |||||||||||||| |||| ||||| |||||||| ||||||||| || |
|
|
| T |
31225368 |
attttcctgttgtatcttgagaagagtatcaactagatcttcatccttgctttcttccttgtgaatgtttttatgatcatcgatgatatcttgcaatatc |
31225269 |
T |
|
| Q |
117 |
atatcaagctctctgtgaagtttttccattttggtcttcgctctactcaagcattgaagcaatttaatagaaggaaacaaatccacaatacaaacgcctc |
216 |
Q |
| |
|
||||||| |||| | ||||| ||||| | |||||||||||| ||||||| |||||||||| ||| ||||||||| ||| ||| |||||||||| |||| |
|
|
| T |
31225268 |
atatcaatctctttatgaagcttttcaactttggtcttcgccctactcacccattgaagcatttttatagaaggatacacatcaacaatacaaaatcctc |
31225169 |
T |
|
| Q |
217 |
ccaacaaacttgatacttcctctattgctgatctaaacactgcttggtgtttgctccttttcccaaaagccgctcgcgctgttatcccatatgtcgttga |
316 |
Q |
| |
|
||| |||||| | || |||| || ||||||||| |||||| || || || ||||||||||||| || || | | |||||||| ||||| ||| |
|
|
| T |
31225168 |
ccatcaaactagttatctcctttagtgctgatctgaacacttgatgctgcttattccttttcccaaacgctgcctgtgtcgttatccccgatgtcattgc |
31225069 |
T |
|
| Q |
317 |
caaaatcttctgagtgagattaacaactgatccttcacttacagttattgatttaacaagattcgtcacttcattttctcttatagacctaaatgattgg |
416 |
Q |
| |
|
||||||| ||| | |||||||||| ||||||||||||| ||| |||||||| ||||||||| | ||| || | |||||||||| |||||||||||||| |
|
|
| T |
31225068 |
ataaatcttatgactcagattaacaattgatccttcacttgcagatattgattcaacaagatttgacacctcttcttctcttatatacctaaatgattgg |
31224969 |
T |
|
| Q |
417 |
acacgctttgcgcttaat |
434 |
Q |
| |
|
||||||||||| |||||| |
|
|
| T |
31224968 |
acacgctttgcacttaat |
31224951 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 126; E-Value: 8e-65
Query Start/End: Original strand, 17 - 434
Target Start/End: Original strand, 31178400 - 31178817
Alignment:
| Q |
17 |
attttcctgttggatcttgagaagaacatctactagatcttcatcattgcttgcttccttgtgaatgcttttgtgatcgtcgatgatgtcttgcaatgtc |
116 |
Q |
| |
|
|||||||||||| ||||||| ||| |||| |||||||||||||| |||||| |||||||||||||| |||| ||||| |||| ||| ||||||||| || |
|
|
| T |
31178400 |
attttcctgttgaatcttgataagtgcatcaactagatcttcatccttgctttcttccttgtgaatgtttttatgatcatcgacgatatcttgcaatatc |
31178499 |
T |
|
| Q |
117 |
atatcaagctctctgtgaagtttttccattttggtcttcgctctactcaagcattgaagcaatttaatagaaggaaacaaatccacaatacaaacgcctc |
216 |
Q |
| |
|
||||||| |||| | |||| ||||| | |||||||||| | | ||||| | |||||||| ||||||||||||| ||| ||| ||||||||| |||| |
|
|
| T |
31178500 |
atatcaatctctttatgaaacttttcaaatttggtcttcaccccactcacccgttgaagcattttaatagaaggatacacatcagcaatacaaaatcctc |
31178599 |
T |
|
| Q |
217 |
ccaacaaacttgatacttcctctattgctgatctaaacactgcttggtgtttgctccttttcccaaaagccgctcgcgctgttatcccatatgtcgttga |
316 |
Q |
| |
|
||| |||||| | || ||||| |||||||||| |||||| ||||||||| ||||||||||||| || ||||| | |||||| | ||||| ||| |
|
|
| T |
31178600 |
ccatcaaactcgctatttcctttattgctgattggaacacttgttggtgtttattccttttcccaaacgctgctcgtgtcgttatcgccgatgtcattgc |
31178699 |
T |
|
| Q |
317 |
caaaatcttctgagtgagattaacaactgatccttcacttacagttattgatttaacaagattcgtcacttcattttctcttatagacctaaatgattgg |
416 |
Q |
| |
|
|||||||| ||| ||||||| ||||||||||||| |||| || ||| ||||||| |||||| | ||| || | |||||||||| |||||||||||||| |
|
|
| T |
31178700 |
gaaaatcttatgactgagatttacaactgatcctttacttgtagatatcgatttaataagatttgacacctcttattctcttatatacctaaatgattgg |
31178799 |
T |
|
| Q |
417 |
acacgctttgcgcttaat |
434 |
Q |
| |
|
||| ||||||| |||||| |
|
|
| T |
31178800 |
acatgctttgcacttaat |
31178817 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 271 - 434
Target Start/End: Complemental strand, 41322243 - 41322079
Alignment:
| Q |
271 |
tccttttcccaaaagccgctcgcgctgttatcccatatgtcgttgacaaaatcttctgagtgagattaacaactgatccttcactt-acagttattgatt |
369 |
Q |
| |
|
|||||||||||||| |||| | ||||||||||||||||||| |||| |||||||||| | |||||||||||||||||||||||||| | ||||||||||| |
|
|
| T |
41322243 |
tccttttcccaaaaaccgccctcgctgttatcccatatgtcattgagaaaatcttctcactgagattaacaactgatccttcacttaaaagttattgatt |
41322144 |
T |
|
| Q |
370 |
taacaagattcgtcacttcattttctcttatagacctaaatgattggacacgctttgcgcttaat |
434 |
Q |
| |
|
|||||||||| |||||||||| |||||||||||||||||||||||||| |||||||| |||||| |
|
|
| T |
41322143 |
taacaagatttgtcacttcatcttctcttatagacctaaatgattggatgcgctttgcacttaat |
41322079 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 16 - 166
Target Start/End: Complemental strand, 41310707 - 41310557
Alignment:
| Q |
16 |
aattttcctgttggatcttgagaagaacatctactagatcttcatcattgcttgcttccttgtgaatgcttttgtgatcgtcgatgatgtcttgcaatgt |
115 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| | |
|
|
| T |
41310707 |
aattttcctgtttaatcttgagaagaacatctactagatcttcatcattgctatcttccttgcgaatgcttttgtgatcgtcgatgatgtcttgcaatat |
41310608 |
T |
|
| Q |
116 |
catatcaagctctctgtgaagtttttccattttggtcttcgctctactcaa |
166 |
Q |
| |
|
||||| || |||| |||||| |||||||||||||| |||||| |||||||| |
|
|
| T |
41310607 |
catataaatctctttgtgaactttttccattttggccttcgccctactcaa |
41310557 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 25 - 434
Target Start/End: Complemental strand, 41366598 - 41366189
Alignment:
| Q |
25 |
gttggatcttgagaagaacatctactagatcttcatcattgcttgcttccttgtgaatgcttttgtgatcgtcgatgatgtcttgcaatgtcatatcaag |
124 |
Q |
| |
|
|||| |||||||||||||||||||||||||| |||| || || |||| ||||||| | ||||||||||| |||||||| ||||||||| |||||||| |
|
|
| T |
41366598 |
gttgaatcttgagaagaacatctactagatcatcattcttcctagctttcttgtgactacttttgtgatcatcgatgatctcttgcaatatcatatcagt |
41366499 |
T |
|
| Q |
125 |
ctctctgtgaagtttttccattttggtcttcgctctactcaagcattgaagcaatttaatagaaggaaacaaatccacaatacaaacgcctcccaacaaa |
224 |
Q |
| |
|
|||||| ||||||||||| | ||| || | | | ||| || |||||| | ||||||||||||| ||||||| ||| | ||| |||||||| | |
|
|
| T |
41366498 |
ctctctatgaagtttttcaagttttttccttggccaacttaacatttgaagaattttaatagaaggatacaaatctgcaaaagaaaatcctcccaatagc |
41366399 |
T |
|
| Q |
225 |
cttgatacttcctctattgctgatctaaacactgcttggtgtttgctccttttcccaaaagccgctcgcgctgttatcccatatgtcgttgacaaaatct |
324 |
Q |
| |
|
| ||| ||||| ||||||||| |||||||| |||||||||| || |||| ||||| || || |||||||| |||||| ||| ||| | |||| |
|
|
| T |
41366398 |
ttaaatatttccttcattgctgatttaaacacttcttggtgtttattcttttttccaaatgctgcccgcgctgtcatcccaattgttaatgagagaatca |
41366299 |
T |
|
| Q |
325 |
tctgagtgagattaacaactgatccttcacttacagttattgatttaacaagattcgtcacttcattttctcttatagacctaaatgattggacacgctt |
424 |
Q |
| |
|
| ||||||||||||||||| |||||||||||| |||||||||||||||||||||| | ||| || | |||||| || ||||||||||||| |||||| || |
|
|
| T |
41366298 |
tttgagtgagattaacaaccgatccttcacttgcagttattgatttaacaagatttgacacctcttcttctctaatggacctaaatgattcgacacgttt |
41366199 |
T |
|
| Q |
425 |
tgcgcttaat |
434 |
Q |
| |
|
||| |||||| |
|
|
| T |
41366198 |
tgcacttaat |
41366189 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 177 - 356
Target Start/End: Complemental strand, 41286322 - 41286143
Alignment:
| Q |
177 |
aatttaatagaaggaaacaaatccacaatacaaacgcctcccaacaaacttgatacttcctctattgctgatctaaacactgcttggtgtttgctccttt |
276 |
Q |
| |
|
||||||||||||||| ||||||| ||||| |||| ||||||| || || || ||||||| |||||| || | || || |||||||| || || ||| |
|
|
| T |
41286322 |
aatttaatagaaggatacaaatcaacaatgcaaaatcctcccatcaggctcaatgcttcctccattgctaatttgaatgcttcttggtgtatgttctttt |
41286223 |
T |
|
| Q |
277 |
tcccaaaagccgctcgcgctgttatcccatatgtcgttgacaaaatcttctgagtgagattaacaactgatccttcactt |
356 |
Q |
| |
|
||||||||| || ||||| ||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41286222 |
tcccaaaagttgcacgcgccgttatcccataggttgttgacaaaatcttctgagtgagattaacaactgatccttcactt |
41286143 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #12
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 17 - 434
Target Start/End: Complemental strand, 41337355 - 41336938
Alignment:
| Q |
17 |
attttcctgttggatcttgagaagaacatctactagatcttcatcattgcttgcttccttgtgaatgcttttgtgatcgtcgatgatgtcttgcaatgtc |
116 |
Q |
| |
|
|||||| ||||| | ||||||||||||||| ||||| |||||||| ||||||| || ||||| || || | ||||| | |||||||||||||||| || |
|
|
| T |
41337355 |
attttcatgttgaaccttgagaagaacatcaactaggtcttcatccttgcttgttttactgtgattgtttctatgatcattgatgatgtcttgcaatatc |
41337256 |
T |
|
| Q |
117 |
atatcaagctctctgtgaagtttttccattttggtcttcgctctactcaagcattgaagcaatttaatagaaggaaacaaatccacaatacaaacgcctc |
216 |
Q |
| |
|
|||||| ||||| || | | | || | | |||||||| ||||||| | |||||| | ||||||||||||| |||| || ||||||||| ||| |
|
|
| T |
41337255 |
ctatcaatctctccttgtaatctctcaactctggtcttcactctacttaccttttgaagtattttaatagaaggatacaagtcagcaatacaaaattctc |
41337156 |
T |
|
| Q |
217 |
ccaacaaacttgatacttcctctattgctgatctaaacactgcttggtgtttgctccttttcccaaaagccgctcgcgctgttatcccatatgtcgttga |
316 |
Q |
| |
|
|||| | | || |||||||||||| |||| | |||| | ||||||| || || |||||||||| || | || || |||||||| ||| |||| |
|
|
| T |
41337155 |
ccaataggcccaatgcttcctctattgttgatttgaacaattgttggtgtctgttctttttcccaaacgctgaacgtgccacgatcccataagtcattga |
41337056 |
T |
|
| Q |
317 |
caaaatcttctgagtgagattaacaactgatccttcacttacagttattgatttaacaagattcgtcacttcattttctcttatagacctaaatgattgg |
416 |
Q |
| |
|
|||||| || || ||||||||| | |||||||||| || ||| ||||||||||||||||| | ||| || | ||||||||| | ||||| |||||| |
|
|
| T |
41337055 |
gaaaatcgacttagagagattaacgattgatccttcatttgcagatattgatttaacaagatcggacacctcttcttctcttatgaaactaaaagattgg |
41336956 |
T |
|
| Q |
417 |
acacgctttgcgcttaat |
434 |
Q |
| |
|
||||| ||||| |||||| |
|
|
| T |
41336955 |
acacgttttgcacttaat |
41336938 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #13
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 19 - 112
Target Start/End: Complemental strand, 41286453 - 41286360
Alignment:
| Q |
19 |
tttcctgttggatcttgagaagaacatctactagatcttcatcattgcttgcttccttgtgaatgcttttgtgatcgtcgatgatgtcttgcaa |
112 |
Q |
| |
|
|||||||||| ||||||||||||||||| | |||||||||||| |||||| ||||| ||||| | ||||| ||||| || ||||||||| |||| |
|
|
| T |
41286453 |
tttcctgttgaatcttgagaagaacatcaattagatcttcatctttgctttcttccatgtgacttcttttatgatcatcaatgatgtctggcaa |
41286360 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #14
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 36 - 199
Target Start/End: Complemental strand, 41369918 - 41369754
Alignment:
| Q |
36 |
agaagaacatctactagatcttcatcattgcttgcttccttgtgaatgcttttgtgatcgtcgatgatgtcttgcaatgtcatatcaagc-tctctgtga |
134 |
Q |
| |
|
||||||||||| ||||| ||||| || ||| || |||| | ||| || |||||||||| | |||||| ||||||||| | |||||| || | ||| ||| |
|
|
| T |
41369918 |
agaagaacatcaactaggtcttcttccttgatttcttctctatgattgtttttgtgatcattgatgatatcttgcaatataatatcatgcctttctctga |
41369819 |
T |
|
| Q |
135 |
agtttttccattttggtcttcgctctactcaagcattgaagcaatttaatagaaggaaacaaatc |
199 |
Q |
| |
|
|||||||||||||||||||| || ||||| | | |||||| | ||||||||||||| ||||||| |
|
|
| T |
41369818 |
agtttttccattttggtctttgccctacttaccctttgaagtattttaatagaaggatacaaatc |
41369754 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 214 - 354
Target Start/End: Complemental strand, 41431180 - 41431040
Alignment:
| Q |
214 |
ctcccaacaaacttgatacttcctctattgctgatctaaacactgcttggtgtttgctccttttcccaaaagccgctcgcgctgttatcccatatgtcgt |
313 |
Q |
| |
|
|||||||||||||| || |||||| ||||| | | |||||||| |||||||||| ||||||| || ||| | | || | ||||||| ||| |||| | |
|
|
| T |
41431180 |
ctcccaacaaacttactatttcctccattgcagttataaacacttgttggtgtttggtccttttgccgaaaactgttcttgatgttatctcatgtgtcat |
41431081 |
T |
|
| Q |
314 |
tgacaaaatcttctgagtgagattaacaactgatccttcac |
354 |
Q |
| |
|
||| || || ||| ||||||||||||||| ||||||||||| |
|
|
| T |
41431080 |
tgagaatatgttccgagtgagattaacaattgatccttcac |
41431040 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #16
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 369 - 434
Target Start/End: Original strand, 31185277 - 31185342
Alignment:
| Q |
369 |
ttaacaagattcgtcacttcattttctcttatagacctaaatgattggacacgctttgcgcttaat |
434 |
Q |
| |
|
||||||||||| | ||| || | |||||||||| |||||||||||| |||||||||||| |||||| |
|
|
| T |
31185277 |
ttaacaagatttgacacctcttcttctcttatatacctaaatgattagacacgctttgcacttaat |
31185342 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 392 - 427
Target Start/End: Complemental strand, 41369624 - 41369589
Alignment:
| Q |
392 |
ttctcttatagacctaaatgattggacacgctttgc |
427 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||| |
|
|
| T |
41369624 |
ttctcttatggacctaaatgattggacacgctttgc |
41369589 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 145 - 199
Target Start/End: Complemental strand, 41322369 - 41322315
Alignment:
| Q |
145 |
ttttggtcttcgctctactcaagcattgaagcaatttaatagaaggaaacaaatc |
199 |
Q |
| |
|
||||||||||| | ||| ||| |||||||||||||||||||||||| ||||||| |
|
|
| T |
41322369 |
ttttggtcttctccctagtcatccattgaagcaatttaatagaaggatacaaatc |
41322315 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 95; Significance: 3e-46; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 19 - 421
Target Start/End: Original strand, 17249135 - 17249537
Alignment:
| Q |
19 |
tttcctgttggatcttgagaagaacatctactagatcttcatcattgcttgcttccttgtgaatgcttttgtgatcgtcgatgatgtcttgcaatgtcat |
118 |
Q |
| |
|
|||| ||||| ||||||| |||| |||| |||||||||||||| |||| ||||| || || || ||||||| || ||||| ||||||||| |||| |
|
|
| T |
17249135 |
tttcttgttgaatcttgataagagcatcaactagatcttcatccttgcgtgctttgttttgtccatttctgtgatcatctatgatatcttgcaatatcat |
17249234 |
T |
|
| Q |
119 |
atcaagctctctgtgaagtttttccattttggtcttcgctctactcaagcattgaagcaatttaatagaaggaaacaaatccacaatacaaacgcctccc |
218 |
Q |
| |
|
||||| || || |||||||||||||||||||| ||| | ||| | | || ||| | ||| ||||||||| ||||||| |||||||||| |||||| |
|
|
| T |
17249235 |
atcaatttccctatgaagtttttccattttggttttcacctgacttacccttttaagtattttgatagaaggatacaaatcaacaatacaaaatcctccc |
17249334 |
T |
|
| Q |
219 |
aacaaacttgatacttcctctattgctgatctaaacactgcttggtgtttgctccttttcccaaaagccgctcgcgctgttatcccatatgtcgttgaca |
318 |
Q |
| |
|
|||||||| || |||||||||||||||| | |||||| |||||||||| |||||||||| ||||| |||||||| |||||||||||| || |
|
|
| T |
17249335 |
aacaaactcactatttcctctattgctgatttgaacacttgttggtgtttgttccttttcccgaaagctgctcgcgccactatcccatatgttaaagaag |
17249434 |
T |
|
| Q |
319 |
aaatcttctgagtgagattaacaactgatccttcacttacagttattgatttaacaagattcgtcacttcattttctcttatagacctaaatgattggac |
418 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||| | ||||||||||||||||| |||||| | |||||||| || ||||| |||||||| |
|
|
| T |
17249435 |
aaatcttctgagtgagattaacaacacatccttcacttgaaaatattgatttaacaagatctaacacttcttcttctcttaccgatctaaacgattggac |
17249534 |
T |
|
| Q |
419 |
acg |
421 |
Q |
| |
|
||| |
|
|
| T |
17249535 |
acg |
17249537 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University