View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3308_low_17 (Length: 440)
Name: NF3308_low_17
Description: NF3308
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3308_low_17 |
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Alignment Details
Target: chr8 (Bit Score: 324; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 17 - 431
Target Start/End: Original strand, 42445005 - 42445427
Alignment:
| Q |
17 |
atttaacttatgtaaagttttggtgttttttctgaacatattttatcctctaaattgtcctacctatagccagaccgattatcccttgctcgcaaattta |
116 |
Q |
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| T |
42445005 |
atttaactcatgtaaagttttggtgttttttctgaacatattttatcctctaaattgttctacctatagccagaccgattatcccttgctcgcaaattta |
42445104 |
T |
|
| Q |
117 |
atgcgatattcaattttgtgaccaaactcatcaaacattttcctccaacaactacagacaattcacaactatttatagatatgattattttatttcttga |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42445105 |
atgcgatattcaattttgtgaccaaactcatcaaacattttcctccaacaactacagacaattcacaactatttatagatatgattattttatttcttga |
42445204 |
T |
|
| Q |
217 |
atactacaatatatgattttgaatgtatagaaaaatgatatatagtttgaaaact---------ataagagataagttcactaatcgctggcagggatgg |
307 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
42445205 |
atactacaatatatgattttgaatgtatagaaaaatgatatatagtttgaaaactagccacttaataagagataagttcactaatcgctggcagggatgg |
42445304 |
T |
|
| Q |
308 |
atccaaggggacgcttacatgcctctaataaatgtatgatgtatatataattttttattttnnnnnnnnntgtatatatannnnnnnncacaattatttg |
407 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||| |
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| T |
42445305 |
atccaaggggacgcttacatgcctctaataaatgtatgatgtatatataattttttatttt-ttaaaaaatgtatatattttttttttcacaattatttg |
42445403 |
T |
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| Q |
408 |
tatttatatttaataaacctatgc |
431 |
Q |
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| T |
42445404 |
tatttatatttaataaacctatgc |
42445427 |
T |
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