View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3308_low_19 (Length: 428)

Name: NF3308_low_19
Description: NF3308
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3308_low_19
NF3308_low_19
[»] chr8 (20 HSPs)
chr8 (205-314)||(28380241-28380350)
chr8 (374-418)||(28380139-28380183)
chr8 (60-101)||(22651995-22652036)
chr8 (60-101)||(25566860-25566901)
chr8 (60-96)||(4298890-4298926)
chr8 (60-96)||(4948671-4948707)
chr8 (53-96)||(24613532-24613575)
chr8 (61-96)||(29447114-29447149)
chr8 (53-96)||(31557008-31557051)
chr8 (61-96)||(40332211-40332246)
chr8 (60-102)||(8342991-8343033)
chr8 (60-94)||(18407738-18407772)
chr8 (78-136)||(28380408-28380466)
chr8 (34-101)||(32168052-32168123)
chr8 (60-101)||(2572055-2572096)
chr8 (53-109)||(5307072-5307128)
chr8 (113-160)||(13397622-13397670)
chr8 (60-96)||(18170486-18170522)
chr8 (60-96)||(18634054-18634090)
chr8 (60-96)||(20873088-20873124)
[»] chr7 (16 HSPs)
chr7 (60-109)||(21560522-21560571)
chr7 (60-96)||(7438725-7438761)
chr7 (34-109)||(9408325-9408401)
chr7 (60-101)||(18039018-18039059)
chr7 (60-101)||(24339661-24339702)
chr7 (60-101)||(26033460-26033501)
chr7 (60-96)||(48438565-48438601)
chr7 (60-101)||(1885592-1885633)
chr7 (60-101)||(2334269-2334310)
chr7 (60-101)||(3991343-3991384)
chr7 (60-101)||(5409835-5409876)
chr7 (60-101)||(9778519-9778560)
chr7 (60-101)||(32094019-32094060)
chr7 (60-96)||(7197301-7197337)
chr7 (60-92)||(25481921-25481953)
chr7 (61-101)||(27945061-27945101)
[»] chr2 (17 HSPs)
chr2 (59-96)||(37558995-37559032)
chr2 (60-96)||(5040753-5040789)
chr2 (60-137)||(23058408-23058482)
chr2 (60-96)||(2438723-2438759)
chr2 (45-96)||(18421966-18422018)
chr2 (60-96)||(19536401-19536437)
chr2 (62-161)||(29367282-29367382)
chr2 (60-95)||(30404855-30404890)
chr2 (59-101)||(15657882-15657924)
chr2 (60-94)||(30717536-30717570)
chr2 (60-93)||(33153443-33153476)
chr2 (30-94)||(5891785-5891849)
chr2 (60-96)||(11223867-11223903)
chr2 (60-96)||(12224242-12224278)
chr2 (61-93)||(14450802-14450834)
chr2 (60-96)||(18255984-18256020)
chr2 (60-96)||(38442326-38442362)
[»] chr1 (27 HSPs)
chr1 (60-108)||(24577178-24577226)
chr1 (60-104)||(28663627-28663671)
chr1 (60-96)||(38078665-38078701)
chr1 (60-161)||(1704934-1705032)
chr1 (52-109)||(15449223-15449280)
chr1 (60-101)||(47989516-47989557)
chr1 (60-96)||(1815276-1815312)
chr1 (53-101)||(6332682-6332730)
chr1 (60-96)||(18337348-18337384)
chr1 (60-96)||(40258937-40258973)
chr1 (60-96)||(51410044-51410080)
chr1 (60-107)||(2283685-2283732)
chr1 (61-95)||(31015063-31015097)
chr1 (60-101)||(113318-113359)
chr1 (60-101)||(1486708-1486749)
chr1 (60-101)||(5944302-5944343)
chr1 (60-93)||(6427483-6427516)
chr1 (60-101)||(6612170-6612211)
chr1 (60-97)||(18471319-18471356)
chr1 (60-160)||(22515827-22515927)
chr1 (60-101)||(31694709-31694750)
chr1 (53-93)||(14359529-14359569)
chr1 (60-96)||(21378597-21378633)
chr1 (60-96)||(22881620-22881656)
chr1 (60-96)||(28273092-28273128)
chr1 (60-92)||(32461471-32461503)
chr1 (60-96)||(42359453-42359489)
[»] chr6 (18 HSPs)
chr6 (53-96)||(28152110-28152153)
chr6 (60-101)||(10770673-10770714)
chr6 (60-101)||(16766716-16766757)
chr6 (60-93)||(17302576-17302609)
chr6 (60-96)||(426518-426554)
chr6 (60-96)||(9522910-9522946)
chr6 (60-96)||(34595153-34595189)
chr6 (62-101)||(9911527-9911566)
chr6 (60-101)||(9107369-9107410)
chr6 (60-93)||(31384939-31384972)
chr6 (60-92)||(4118341-4118373)
chr6 (60-96)||(7801160-7801196)
chr6 (60-96)||(7977834-7977870)
chr6 (61-101)||(9617454-9617494)
chr6 (60-96)||(15489736-15489772)
chr6 (60-96)||(16833327-16833363)
chr6 (61-101)||(19369837-19369877)
chr6 (60-96)||(28715314-28715350)
[»] chr4 (24 HSPs)
chr4 (53-96)||(12797342-12797385)
chr4 (60-157)||(28084541-28084640)
chr4 (37-158)||(4157145-4157266)
chr4 (60-160)||(11596297-11596392)
chr4 (42-92)||(40481637-40481687)
chr4 (60-101)||(12895115-12895156)
chr4 (60-96)||(29205463-29205499)
chr4 (60-96)||(42640548-42640584)
chr4 (42-93)||(4383368-4383419)
chr4 (53-96)||(16073406-16073449)
chr4 (61-96)||(24613705-24613740)
chr4 (60-102)||(31800476-31800518)
chr4 (60-160)||(23292926-23293026)
chr4 (60-93)||(28964255-28964288)
chr4 (60-101)||(30298966-30299007)
chr4 (60-101)||(30327834-30327875)
chr4 (60-92)||(715615-715647)
chr4 (60-92)||(752941-752973)
chr4 (60-96)||(6485615-6485651)
chr4 (60-96)||(6879469-6879505)
chr4 (60-96)||(21945522-21945558)
chr4 (53-85)||(32915621-32915653)
chr4 (60-96)||(49431045-49431081)
chr4 (60-96)||(54580027-54580063)
[»] scaffold0246 (1 HSPs)
scaffold0246 (42-92)||(19576-19626)
[»] chr5 (17 HSPs)
chr5 (60-94)||(31084342-31084376)
chr5 (60-96)||(6247641-6247677)
chr5 (62-98)||(7218269-7218305)
chr5 (60-96)||(8420046-8420082)
chr5 (60-104)||(10298588-10298632)
chr5 (60-96)||(15884007-15884043)
chr5 (60-96)||(21191060-21191096)
chr5 (60-100)||(24906301-24906341)
chr5 (60-94)||(21576751-21576785)
chr5 (60-101)||(13287398-13287439)
chr5 (60-93)||(15405062-15405095)
chr5 (60-93)||(39698560-39698593)
chr5 (60-96)||(21351909-21351945)
chr5 (60-96)||(30135333-30135369)
chr5 (43-98)||(30136676-30136732)
chr5 (60-96)||(33178044-33178080)
chr5 (60-96)||(42893379-42893415)
[»] scaffold0025 (1 HSPs)
scaffold0025 (60-101)||(23789-23830)
[»] chr3 (21 HSPs)
chr3 (60-101)||(21256985-21257026)
chr3 (56-101)||(27505261-27505306)
chr3 (60-101)||(28918020-28918061)
chr3 (60-109)||(34910336-34910385)
chr3 (53-94)||(35994744-35994785)
chr3 (60-101)||(49651785-49651826)
chr3 (60-160)||(55401094-55401194)
chr3 (53-101)||(14829701-14829749)
chr3 (60-96)||(26508129-26508165)
chr3 (60-108)||(39756255-39756303)
chr3 (60-101)||(1509558-1509599)
chr3 (60-93)||(14209132-14209165)
chr3 (60-93)||(14832118-14832151)
chr3 (63-96)||(25775531-25775564)
chr3 (60-101)||(34185122-34185163)
chr3 (60-92)||(4987299-4987331)
chr3 (60-96)||(8587025-8587061)
chr3 (60-96)||(8593156-8593192)
chr3 (60-96)||(10954971-10955007)
chr3 (60-96)||(20503484-20503520)
chr3 (60-96)||(51206357-51206393)
[»] scaffold0021 (1 HSPs)
scaffold0021 (60-96)||(130501-130537)
[»] scaffold0223 (1 HSPs)
scaffold0223 (60-93)||(20191-20224)
[»] scaffold0171 (1 HSPs)
scaffold0171 (60-101)||(23439-23480)
[»] scaffold0136 (1 HSPs)
scaffold0136 (60-93)||(3856-3889)
[»] scaffold0004 (1 HSPs)
scaffold0004 (63-96)||(123650-123683)
[»] scaffold0793 (1 HSPs)
scaffold0793 (60-92)||(4891-4923)
[»] scaffold0652 (1 HSPs)
scaffold0652 (60-96)||(466-502)
[»] scaffold0123 (1 HSPs)
scaffold0123 (61-101)||(44524-44564)
[»] scaffold0103 (1 HSPs)
scaffold0103 (60-92)||(51830-51862)
[»] scaffold0027 (1 HSPs)
scaffold0027 (60-96)||(46701-46737)
[»] scaffold0011 (1 HSPs)
scaffold0011 (60-96)||(17753-17789)


Alignment Details
Target: chr8 (Bit Score: 106; Significance: 7e-53; HSPs: 20)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 205 - 314
Target Start/End: Complemental strand, 28380350 - 28380241
Alignment:
Q  205 gacatggaattctaaagttttcatgtgagaatcacaaaagacaaacaaaccgtgactctttttgttgtgttttgcttaaaccctctctttctctttcatt 304  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28380350 gacatggaattctaaagttttcatgtgagaatcacaaaagacaaacaaaccgtgactctttttgttgtgttttgcttaaaccctctctttctctttcatt 28380251  T
Q  305 ctaacacttt 314  Q
    ||||| ||||    
T  28380250 ctaactcttt 28380241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 374 - 418
Target Start/End: Complemental strand, 28380183 - 28380139
Alignment:
Q  374 tagaatgttatcctttttaatgctctcatgcttctttttcctttg 418  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  28380183 tagaatgttatcctttttaatgctctcatgcttctttttcctttg 28380139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 60 - 101
Target Start/End: Original strand, 22651995 - 22652036
Alignment:
Q  60 aaaaatcacataattcaatgtaattacaagtgtcggtatcgt 101  Q
    ||||||||||||||||||| ||||||||||||||||| ||||    
T  22651995 aaaaatcacataattcaatataattacaagtgtcggtgtcgt 22652036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 60 - 101
Target Start/End: Original strand, 25566860 - 25566901
Alignment:
Q  60 aaaaatcacataattcaatgtaattacaagtgtcggtatcgt 101  Q
    ||||||||||||||||| ||||||||||||||||||| ||||    
T  25566860 aaaaatcacataattcagtgtaattacaagtgtcggtgtcgt 25566901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 60 - 96
Target Start/End: Complemental strand, 4298926 - 4298890
Alignment:
Q  60 aaaaatcacataattcaatgtaattacaagtgtcggt 96  Q
    ||||||||||||||| |||||||||||||||||||||    
T  4298926 aaaaatcacataatttaatgtaattacaagtgtcggt 4298890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 60 - 96
Target Start/End: Original strand, 4948671 - 4948707
Alignment:
Q  60 aaaaatcacataattcaatgtaattacaagtgtcggt 96  Q
    ||||||||||||||||| |||||||||||||||||||    
T  4948671 aaaaatcacataattcagtgtaattacaagtgtcggt 4948707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 53 - 96
Target Start/End: Original strand, 24613532 - 24613575
Alignment:
Q  53 taattttaaaaatcacataattcaatgtaattacaagtgtcggt 96  Q
    |||||| ||||||||||||||| | |||||||||||||||||||    
T  24613532 taatttgaaaaatcacataattaagtgtaattacaagtgtcggt 24613575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 61 - 96
Target Start/End: Complemental strand, 29447149 - 29447114
Alignment:
Q  61 aaaatcacataattcaatgtaattacaagtgtcggt 96  Q
    |||||||||||||||||||||| |||||||||||||    
T  29447149 aaaatcacataattcaatgtaactacaagtgtcggt 29447114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 53 - 96
Target Start/End: Original strand, 31557008 - 31557051
Alignment:
Q  53 taattttaaaaatcacataattcaatgtaattacaagtgtcggt 96  Q
    |||||| ||||||||||||||||| ||||||||||||| |||||    
T  31557008 taatttgaaaaatcacataattcagtgtaattacaagtttcggt 31557051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 61 - 96
Target Start/End: Original strand, 40332211 - 40332246
Alignment:
Q  61 aaaatcacataattcaatgtaattacaagtgtcggt 96  Q
    |||||||||||||||| |||||||||||||||||||    
T  40332211 aaaatcacataattcagtgtaattacaagtgtcggt 40332246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 60 - 102
Target Start/End: Original strand, 8342991 - 8343033
Alignment:
Q  60 aaaaatcacataattcaatgtaattacaagtgtcggtatcgta 102  Q
    ||||||||||||||| | ||||||||||||||||||| |||||    
T  8342991 aaaaatcacataatttagtgtaattacaagtgtcggtgtcgta 8343033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 60 - 94
Target Start/End: Original strand, 18407738 - 18407772
Alignment:
Q  60 aaaaatcacataattcaatgtaattacaagtgtcg 94  Q
    ||||||||||||||||| |||||||||||||||||    
T  18407738 aaaaatcacataattcagtgtaattacaagtgtcg 18407772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 78 - 136
Target Start/End: Complemental strand, 28380466 - 28380408
Alignment:
Q  78 tgtaattacaagtgtcggtatcgtatccgtgtacttgtccgacatcgagacacgcctaa 136  Q
    ||||||||||||||| ||| |||| || ||||| || ||||||| ||||||||||||||    
T  28380466 tgtaattacaagtgttggtgtcgtgtctgtgtatttatccgacaccgagacacgcctaa 28380408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 34 - 101
Target Start/End: Original strand, 32168052 - 32168123
Alignment:
Q  34 gacacactgatacaattagtaatttt----aaaaatcacataattcaatgtaattacaagtgtcggtatcgt 101  Q
    ||||||| ||||||| || |||||||    |||||||| |||||||||| |||||||||||||| |||||||    
T  32168052 gacacaccgatacaactaataatttttaaaaaaaatcatataattcaatttaattacaagtgtcagtatcgt 32168123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 60 - 101
Target Start/End: Complemental strand, 2572096 - 2572055
Alignment:
Q  60 aaaaatcacataattcaatgtaattacaagtgtcggtatcgt 101  Q
    ||||||||||||||| | ||||||||||||||||||| ||||    
T  2572096 aaaaatcacataatttagtgtaattacaagtgtcggtgtcgt 2572055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 53 - 109
Target Start/End: Original strand, 5307072 - 5307128
Alignment:
Q  53 taattttaaaaatcacataattcaatgtaattacaagtgtcggtatcgtatccgtgt 109  Q
    |||||| |||||| ||||||||||||| ||| | |||||||||| |||| |||||||    
T  5307072 taatttgaaaaatgacataattcaatgaaatcataagtgtcggtgtcgtgtccgtgt 5307128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 113 - 160
Target Start/End: Original strand, 13397622 - 13397670
Alignment:
Q  113 tgtccgacatcgagacacgcctaattc-aggggtgtctgtgcttcatag 160  Q
    ||||||||| ||||||||||||||||| ||| ||||| |||||||||||    
T  13397622 tgtccgacaccgagacacgcctaattcaaggagtgtccgtgcttcatag 13397670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 60 - 96
Target Start/End: Complemental strand, 18170522 - 18170486
Alignment:
Q  60 aaaaatcacataattcaatgtaattacaagtgtcggt 96  Q
    |||||| |||||||||||||||||||||| |||||||    
T  18170522 aaaaattacataattcaatgtaattacaaatgtcggt 18170486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 60 - 96
Target Start/End: Complemental strand, 18634090 - 18634054
Alignment:
Q  60 aaaaatcacataattcaatgtaattacaagtgtcggt 96  Q
    |||||| |||||||||||||||||||||| |||||||    
T  18634090 aaaaattacataattcaatgtaattacaaatgtcggt 18634054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 60 - 96
Target Start/End: Original strand, 20873088 - 20873124
Alignment:
Q  60 aaaaatcacataattcaatgtaattacaagtgtcggt 96  Q
    ||||||||||||||| | |||||||||||||||||||    
T  20873088 aaaaatcacataatttagtgtaattacaagtgtcggt 20873124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000003; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 60 - 109
Target Start/End: Original strand, 21560522 - 21560571
Alignment:
Q  60 aaaaatcacataattcaatgtaattacaagtgtcggtatcgtatccgtgt 109  Q
    ||||||||||||||||| ||||||||||||||||||| ||||||| ||||    
T  21560522 aaaaatcacataattcagtgtaattacaagtgtcggtgtcgtatcggtgt 21560571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 60 - 96
Target Start/End: Original strand, 7438725 - 7438761
Alignment:
Q  60 aaaaatcacataattcaatgtaattacaagtgtcggt 96  Q
    |||||||||||||||||||||||||||||||||||||    
T  7438725 aaaaatcacataattcaatgtaattacaagtgtcggt 7438761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 34 - 109
Target Start/End: Complemental strand, 9408401 - 9408325
Alignment:
Q  34 gacacactgatacaattagtaattttaaaaa-tcacataattcaatgtaattacaagtgtcggtatcgtatccgtgt 109  Q
    ||||||| || ||||||| |||||| ||||| |||||||||| | ||||||||||||||||||| ||||||| ||||    
T  9408401 gacacaccgacacaattaataatttgaaaaaatcacataatttagtgtaattacaagtgtcggtgtcgtatcggtgt 9408325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 60 - 101
Target Start/End: Original strand, 18039018 - 18039059
Alignment:
Q  60 aaaaatcacataattcaatgtaattacaagtgtcggtatcgt 101  Q
    ||||||||||||||||| ||||||||||||||||||| ||||    
T  18039018 aaaaatcacataattcagtgtaattacaagtgtcggtgtcgt 18039059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 60 - 101
Target Start/End: Original strand, 24339661 - 24339702
Alignment:
Q  60 aaaaatcacataattcaatgtaattacaagtgtcggtatcgt 101  Q
    ||||||||||||||||| ||||||||||||||||||| ||||    
T  24339661 aaaaatcacataattcagtgtaattacaagtgtcggtgtcgt 24339702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 60 - 101
Target Start/End: Complemental strand, 26033501 - 26033460
Alignment:
Q  60 aaaaatcacataattcaatgtaattacaagtgtcggtatcgt 101  Q
    ||||||||||||||||| ||||||||||||||||||| ||||    
T  26033501 aaaaatcacataattcagtgtaattacaagtgtcggtctcgt 26033460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 60 - 96
Target Start/End: Original strand, 48438565 - 48438601
Alignment:
Q  60 aaaaatcacataattcaatgtaattacaagtgtcggt 96  Q
    |||||||||||||||||||||||||||| ||||||||    
T  48438565 aaaaatcacataattcaatgtaattacacgtgtcggt 48438601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 60 - 101
Target Start/End: Original strand, 1885592 - 1885633
Alignment:
Q  60 aaaaatcacataattcaatgtaattacaagtgtcggtatcgt 101  Q
    |||||| ||||||||||||||||| |||||||||||| ||||    
T  1885592 aaaaatgacataattcaatgtaatcacaagtgtcggtgtcgt 1885633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 60 - 101
Target Start/End: Original strand, 2334269 - 2334310
Alignment:
Q  60 aaaaatcacataattcaatgtaattacaagtgtcggtatcgt 101  Q
    ||||||||||||||| | ||||||||||||||||||| ||||    
T  2334269 aaaaatcacataatttagtgtaattacaagtgtcggtgtcgt 2334310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 60 - 101
Target Start/End: Original strand, 3991343 - 3991384
Alignment:
Q  60 aaaaatcacataattcaatgtaattacaagtgtcggtatcgt 101  Q
    ||||||||||||||||| | ||||||||||||||||| ||||    
T  3991343 aaaaatcacataattcagtataattacaagtgtcggtgtcgt 3991384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 60 - 101
Target Start/End: Complemental strand, 5409876 - 5409835
Alignment:
Q  60 aaaaatcacataattcaatgtaattacaagtgtcggtatcgt 101  Q
    ||||||||||||||||| || |||||||||||||||| ||||    
T  5409876 aaaaatcacataattcagtgcaattacaagtgtcggtgtcgt 5409835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 60 - 101
Target Start/End: Original strand, 9778519 - 9778560
Alignment:
Q  60 aaaaatcacataattcaatgtaattacaagtgtcggtatcgt 101  Q
    ||||||||||||||||| | ||||||||||||||||| ||||    
T  9778519 aaaaatcacataattcagtataattacaagtgtcggtgtcgt 9778560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 60 - 101
Target Start/End: Complemental strand, 32094060 - 32094019
Alignment:
Q  60 aaaaatcacataattcaatgtaattacaagtgtcggtatcgt 101  Q
    ||||||||||||||||| ||||||||||| ||||||| ||||    
T  32094060 aaaaatcacataattcagtgtaattacaaatgtcggtgtcgt 32094019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 60 - 96
Target Start/End: Complemental strand, 7197337 - 7197301
Alignment:
Q  60 aaaaatcacataattcaatgtaattacaagtgtcggt 96  Q
    ||||||||  |||||||||||||||||||||||||||    
T  7197337 aaaaatcatttaattcaatgtaattacaagtgtcggt 7197301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 60 - 92
Target Start/End: Original strand, 25481921 - 25481953
Alignment:
Q  60 aaaaatcacataattcaatgtaattacaagtgt 92  Q
    ||||||||||||||||| |||||||||||||||    
T  25481921 aaaaatcacataattcagtgtaattacaagtgt 25481953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 61 - 101
Target Start/End: Original strand, 27945061 - 27945101
Alignment:
Q  61 aaaatcacataattcaatgtaattacaagtgtcggtatcgt 101  Q
    ||||| |||||||||| ||||||||||||||||||| ||||    
T  27945061 aaaattacataattcagtgtaattacaagtgtcggtgtcgt 27945101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000003; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 59 - 96
Target Start/End: Original strand, 37558995 - 37559032
Alignment:
Q  59 taaaaatcacataattcaatgtaattacaagtgtcggt 96  Q
    ||||||||||||||||||||||||||||||||||||||    
T  37558995 taaaaatcacataattcaatgtaattacaagtgtcggt 37559032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 60 - 96
Target Start/End: Original strand, 5040753 - 5040789
Alignment:
Q  60 aaaaatcacataattcaatgtaattacaagtgtcggt 96  Q
    |||||||||||||||||||||||||||||||||||||    
T  5040753 aaaaatcacataattcaatgtaattacaagtgtcggt 5040789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 60 - 137
Target Start/End: Complemental strand, 23058482 - 23058408
Alignment:
Q  60 aaaaatcacataattcaatgtaattacaagtgtcggtatcgtatccgtgtacttgtccgacatcgagacacgcctaat 137  Q
    |||||||||||||| || ||||||||||||||||||| |||| || |||   |||||||||| || ||||||||||||    
T  23058482 aaaaatcacataatccagtgtaattacaagtgtcggtgtcgtgtcggtg---ttgtccgacaccgggacacgcctaat 23058408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 60 - 96
Target Start/End: Complemental strand, 2438759 - 2438723
Alignment:
Q  60 aaaaatcacataattcaatgtaattacaagtgtcggt 96  Q
    ||||||||||||||||| |||||||||||||||||||    
T  2438759 aaaaatcacataattcagtgtaattacaagtgtcggt 2438723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 45 - 96
Target Start/End: Original strand, 18421966 - 18422018
Alignment:
Q  45 acaattagtaattttaaaa-atcacataattcaatgtaattacaagtgtcggt 96  Q
    ||||||| |||||| |||| ||||||||||||| |||||||||||||||||||    
T  18421966 acaattaataatttaaaaatatcacataattcagtgtaattacaagtgtcggt 18422018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 60 - 96
Target Start/End: Complemental strand, 19536437 - 19536401
Alignment:
Q  60 aaaaatcacataattcaatgtaattacaagtgtcggt 96  Q
    ||||||||||||||||| |||||||||||||||||||    
T  19536437 aaaaatcacataattcagtgtaattacaagtgtcggt 19536401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 62 - 161
Target Start/End: Complemental strand, 29367382 - 29367282
Alignment:
Q  62 aaatcacataattcaatgtaattacaagtgtcggtatcgtatccgtgtacttgtccgacatcgagacacgcctaattc-aggggtgtctgtgcttcatag 160  Q
    ||||||||||||| | ||||||||||| |||||||||||| || ||  |  ||||||||| ||||||| ||||||| | |||  ||| ||||||||||||    
T  29367382 aaatcacataatttagtgtaattacaaatgtcggtatcgtgtcggtacatgtgtccgacaccgagacatgcctaatccgaggaatgtttgtgcttcatag 29367283  T
Q  161 a 161  Q
    |    
T  29367282 a 29367282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 60 - 95
Target Start/End: Complemental strand, 30404890 - 30404855
Alignment:
Q  60 aaaaatcacataattcaatgtaattacaagtgtcgg 95  Q
    ||||||||||||||||| ||||||||||||||||||    
T  30404890 aaaaatcacataattcagtgtaattacaagtgtcgg 30404855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 59 - 101
Target Start/End: Original strand, 15657882 - 15657924
Alignment:
Q  59 taaaaatcacataattcaatgtaattacaagtgtcggtatcgt 101  Q
    |||||||||||||||||| ||||||||||| ||||||| ||||    
T  15657882 taaaaatcacataattcagtgtaattacaaatgtcggtgtcgt 15657924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 60 - 94
Target Start/End: Complemental strand, 30717570 - 30717536
Alignment:
Q  60 aaaaatcacataattcaatgtaattacaagtgtcg 94  Q
    ||||||||||||||||| |||||||||||||||||    
T  30717570 aaaaatcacataattcagtgtaattacaagtgtcg 30717536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 60 - 93
Target Start/End: Original strand, 33153443 - 33153476
Alignment:
Q  60 aaaaatcacataattcaatgtaattacaagtgtc 93  Q
    ||||||||||||||||| ||||||||||||||||    
T  33153443 aaaaatcacataattcagtgtaattacaagtgtc 33153476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 30 - 94
Target Start/End: Complemental strand, 5891849 - 5891785
Alignment:
Q  30 tatagacacactgatacaattagtaattttaaaaatcacataattcaatgtaattacaagtgtcg 94  Q
    ||||||||||| || ||| ||| ||||||||||||| ||||||||   |||||||| ||||||||    
T  5891849 tatagacacaccgacacagttaataattttaaaaattacataattatgtgtaattataagtgtcg 5891785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 60 - 96
Target Start/End: Complemental strand, 11223903 - 11223867
Alignment:
Q  60 aaaaatcacataattcaatgtaattacaagtgtcggt 96  Q
    |||||| |||||||||| |||||||||||||||||||    
T  11223903 aaaaataacataattcagtgtaattacaagtgtcggt 11223867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 60 - 96
Target Start/End: Original strand, 12224242 - 12224278
Alignment:
Q  60 aaaaatcacataattcaatgtaattacaagtgtcggt 96  Q
    ||||||| |||||| ||||||||||||||||||||||    
T  12224242 aaaaatcccataatccaatgtaattacaagtgtcggt 12224278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 61 - 93
Target Start/End: Complemental strand, 14450834 - 14450802
Alignment:
Q  61 aaaatcacataattcaatgtaattacaagtgtc 93  Q
    ||||||||||||||||||||||| |||||||||    
T  14450834 aaaatcacataattcaatgtaatcacaagtgtc 14450802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 60 - 96
Target Start/End: Complemental strand, 18256020 - 18255984
Alignment:
Q  60 aaaaatcacataattcaatgtaattacaagtgtcggt 96  Q
    ||||||||||||||| |||||||||| ||||||||||    
T  18256020 aaaaatcacataatttaatgtaattagaagtgtcggt 18255984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 60 - 96
Target Start/End: Original strand, 38442326 - 38442362
Alignment:
Q  60 aaaaatcacataattcaatgtaattacaagtgtcggt 96  Q
    ||||||||||||||||||| |||||| ||||||||||    
T  38442326 aaaaatcacataattcaatataattataagtgtcggt 38442362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.00000000001; HSPs: 27)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 60 - 108
Target Start/End: Complemental strand, 24577226 - 24577178
Alignment:
Q  60 aaaaatcacataattcaatgtaattacaagtgtcggtatcgtatccgtg 108  Q
    ||||||||||||||||| ||||||||||||||||||| |||| ||||||    
T  24577226 aaaaatcacataattcagtgtaattacaagtgtcggtgtcgtgtccgtg 24577178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 60 - 104
Target Start/End: Original strand, 28663627 - 28663671
Alignment:
Q  60 aaaaatcacataattcaatgtaattacaagtgtcggtatcgtatc 104  Q
    |||||||||||||||| |||||||||||||||||||| |||||||    
T  28663627 aaaaatcacataattctatgtaattacaagtgtcggtgtcgtatc 28663671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 60 - 96
Target Start/End: Complemental strand, 38078701 - 38078665
Alignment:
Q  60 aaaaatcacataattcaatgtaattacaagtgtcggt 96  Q
    |||||||||||||||||||||||||||||||||||||    
T  38078701 aaaaatcacataattcaatgtaattacaagtgtcggt 38078665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 60 - 161
Target Start/End: Complemental strand, 1705032 - 1704934
Alignment:
Q  60 aaaaatcacataattcaatgtaattacaagtgtcggtatcgtatccgtgtacttgtccgacatcgagacacgcctaattc-aggggtgtctgtgcttcat 158  Q
    |||||||||||||||||  |||||||||||||||||| ||||    ||  || ||||||||| ||||||||||||||| | ||| |||||  ||||||||    
T  1705032 aaaaatcacataattcagggtaattacaagtgtcggtgtcgt----gtcaacgtgtccgacaccgagacacgcctaatccaaggagtgtccatgcttcat 1704937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 52 - 109
Target Start/End: Complemental strand, 15449280 - 15449223
Alignment:
Q  52 gtaattttaaaaatcacataattcaatgtaattacaagtgtcggtatcgtatccgtgt 109  Q
    ||||||| ||||||||||||||| | |||||||||||||||| || ||||||| ||||    
T  15449280 gtaatttgaaaaatcacataatttagtgtaattacaagtgtctgtgtcgtatcggtgt 15449223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 60 - 101
Target Start/End: Original strand, 47989516 - 47989557
Alignment:
Q  60 aaaaatcacataattcaatgtaattacaagtgtcggtatcgt 101  Q
    ||||||||||||||||| ||||||||||||||||||| ||||    
T  47989516 aaaaatcacataattcagtgtaattacaagtgtcggtgtcgt 47989557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 60 - 96
Target Start/End: Original strand, 1815276 - 1815312
Alignment:
Q  60 aaaaatcacataattcaatgtaattacaagtgtcggt 96  Q
    ||||||||||||||||| |||||||||||||||||||    
T  1815276 aaaaatcacataattcagtgtaattacaagtgtcggt 1815312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 53 - 101
Target Start/End: Original strand, 6332682 - 6332730
Alignment:
Q  53 taattttaaaaatcacataattcaatgtaattacaagtgtcggtatcgt 101  Q
    |||||| ||||||||||||||||| ||||||||||||| ||||| ||||    
T  6332682 taatttgaaaaatcacataattcagtgtaattacaagtatcggtgtcgt 6332730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 60 - 96
Target Start/End: Original strand, 18337348 - 18337384
Alignment:
Q  60 aaaaatcacataattcaatgtaattacaagtgtcggt 96  Q
    ||||||||||||||||| |||||||||||||||||||    
T  18337348 aaaaatcacataattcagtgtaattacaagtgtcggt 18337384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 60 - 96
Target Start/End: Complemental strand, 40258973 - 40258937
Alignment:
Q  60 aaaaatcacataattcaatgtaattacaagtgtcggt 96  Q
    ||||||||||||||||| |||||||||||||||||||    
T  40258973 aaaaatcacataattcagtgtaattacaagtgtcggt 40258937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 60 - 96
Target Start/End: Original strand, 51410044 - 51410080
Alignment:
Q  60 aaaaatcacataattcaatgtaattacaagtgtcggt 96  Q
    ||||||||||||||||| |||||||||||||||||||    
T  51410044 aaaaatcacataattcagtgtaattacaagtgtcggt 51410080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 60 - 107
Target Start/End: Original strand, 2283685 - 2283732
Alignment:
Q  60 aaaaatcacataattcaatgtaattacaagtgtcggtatcgtatccgt 107  Q
    ||||||||||| |||||||||||||| |||||| ||| ||||||||||    
T  2283685 aaaaatcacatgattcaatgtaattataagtgttggtgtcgtatccgt 2283732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 61 - 95
Target Start/End: Original strand, 31015063 - 31015097
Alignment:
Q  61 aaaatcacataattcaatgtaattacaagtgtcgg 95  Q
    |||||||||||||||| ||||||||||||||||||    
T  31015063 aaaatcacataattcagtgtaattacaagtgtcgg 31015097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 60 - 101
Target Start/End: Original strand, 113318 - 113359
Alignment:
Q  60 aaaaatcacataattcaatgtaattacaagtgtcggtatcgt 101  Q
    ||||||||||||||||| ||||||||||||||| ||| ||||    
T  113318 aaaaatcacataattcagtgtaattacaagtgtaggtgtcgt 113359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 60 - 101
Target Start/End: Complemental strand, 1486749 - 1486708
Alignment:
Q  60 aaaaatcacataattcaatgtaattacaagtgtcggtatcgt 101  Q
    ||||||||||||||||| |||||||| |||||||||| ||||    
T  1486749 aaaaatcacataattcagtgtaattataagtgtcggtgtcgt 1486708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 60 - 101
Target Start/End: Original strand, 5944302 - 5944343
Alignment:
Q  60 aaaaatcacataattcaatgtaattacaagtgtcggtatcgt 101  Q
    ||||||||||||||||| |||||||| |||||||||| ||||    
T  5944302 aaaaatcacataattcagtgtaattataagtgtcggtgtcgt 5944343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 60 - 93
Target Start/End: Original strand, 6427483 - 6427516
Alignment:
Q  60 aaaaatcacataattcaatgtaattacaagtgtc 93  Q
    ||||||||||||||||||||||| ||||||||||    
T  6427483 aaaaatcacataattcaatgtaactacaagtgtc 6427516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 60 - 101
Target Start/End: Complemental strand, 6612211 - 6612170
Alignment:
Q  60 aaaaatcacataattcaatgtaattacaagtgtcggtatcgt 101  Q
    |||||| |||||||||| ||||||||||||||||||| ||||    
T  6612211 aaaaattacataattcagtgtaattacaagtgtcggtgtcgt 6612170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 60 - 97
Target Start/End: Original strand, 18471319 - 18471356
Alignment:
Q  60 aaaaatcacataattcaatgtaattacaagtgtcggta 97  Q
    ||||||||||||||||| | ||||||||||||||||||    
T  18471319 aaaaatcacataattcagtataattacaagtgtcggta 18471356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 60 - 160
Target Start/End: Complemental strand, 22515927 - 22515827
Alignment:
Q  60 aaaaatcacataattcaatgtaattacaagtgtcggtatcgtatccgtgtacttgtccgacatcgagacacgcctaattc-aggggtgtctgtgcttcat 158  Q
    ||||||||||||||| | ||||||||||||||||||| ||| |  ||   || | ||||||| ||||||||||||||| | ||| ||||| |||||||||    
T  22515927 aaaaatcacataatttagtgtaattacaagtgtcggtgtcggacacg-acacatatccgacaccgagacacgcctaatccgaggagtgtccgtgcttcat 22515829  T
Q  159 ag 160  Q
    ||    
T  22515828 ag 22515827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 60 - 101
Target Start/End: Complemental strand, 31694750 - 31694709
Alignment:
Q  60 aaaaatcacataattcaatgtaattacaagtgtcggtatcgt 101  Q
    ||||||||||||||||| | ||||||||||||||||| ||||    
T  31694750 aaaaatcacataattcagtataattacaagtgtcggtgtcgt 31694709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 53 - 93
Target Start/End: Complemental strand, 14359569 - 14359529
Alignment:
Q  53 taattttaaaaatcacataattcaatgtaattacaagtgtc 93  Q
    |||||| ||||||||||||||| | ||||||||||||||||    
T  14359569 taatttgaaaaatcacataatttagtgtaattacaagtgtc 14359529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 60 - 96
Target Start/End: Original strand, 21378597 - 21378633
Alignment:
Q  60 aaaaatcacataattcaatgtaattacaagtgtcggt 96  Q
    |||||| |||||||||| |||||||||||||||||||    
T  21378597 aaaaattacataattcagtgtaattacaagtgtcggt 21378633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 60 - 96
Target Start/End: Complemental strand, 22881656 - 22881620
Alignment:
Q  60 aaaaatcacataattcaatgtaattacaagtgtcggt 96  Q
    ||||||||||||||| | |||||||||||||||||||    
T  22881656 aaaaatcacataatttagtgtaattacaagtgtcggt 22881620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 60 - 96
Target Start/End: Complemental strand, 28273128 - 28273092
Alignment:
Q  60 aaaaatcacataattcaatgtaattacaagtgtcggt 96  Q
    |||||||| |||||||| |||||||||||||||||||    
T  28273128 aaaaatcatataattcagtgtaattacaagtgtcggt 28273092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 60 - 92
Target Start/End: Complemental strand, 32461503 - 32461471
Alignment:
Q  60 aaaaatcacataattcaatgtaattacaagtgt 92  Q
    ||||||||||||||| |||||||||||||||||    
T  32461503 aaaaatcacataatttaatgtaattacaagtgt 32461471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 60 - 96
Target Start/End: Complemental strand, 42359489 - 42359453
Alignment:
Q  60 aaaaatcacataattcaatgtaattacaagtgtcggt 96  Q
    |||||||||| |||||| |||||||||||||||||||    
T  42359489 aaaaatcacaaaattcagtgtaattacaagtgtcggt 42359453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000004; HSPs: 18)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 53 - 96
Target Start/End: Original strand, 28152110 - 28152153
Alignment:
Q  53 taattttaaaaatcacataattcaatgtaattacaagtgtcggt 96  Q
    |||||| ||||||||||||||||| |||||||||||||||||||    
T  28152110 taatttgaaaaatcacataattcagtgtaattacaagtgtcggt 28152153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 60 - 101
Target Start/End: Complemental strand, 10770714 - 10770673
Alignment:
Q  60 aaaaatcacataattcaatgtaattacaagtgtcggtatcgt 101  Q
    ||||||||||||||||| ||||||||||||||||||| ||||    
T  10770714 aaaaatcacataattcagtgtaattacaagtgtcggtgtcgt 10770673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 60 - 101
Target Start/End: Original strand, 16766716 - 16766757
Alignment:
Q  60 aaaaatcacataattcaatgtaattacaagtgtcggtatcgt 101  Q
    ||||||||||||||||| ||||||||||||||||||| ||||    
T  16766716 aaaaatcacataattcagtgtaattacaagtgtcggtgtcgt 16766757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 60 - 93
Target Start/End: Original strand, 17302576 - 17302609
Alignment:
Q  60 aaaaatcacataattcaatgtaattacaagtgtc 93  Q
    ||||||||||||||||||||||||||||||||||    
T  17302576 aaaaatcacataattcaatgtaattacaagtgtc 17302609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 60 - 96
Target Start/End: Complemental strand, 426554 - 426518
Alignment:
Q  60 aaaaatcacataattcaatgtaattacaagtgtcggt 96  Q
    ||||||||||||||| |||||||||||||||||||||    
T  426554 aaaaatcacataattaaatgtaattacaagtgtcggt 426518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 60 - 96
Target Start/End: Original strand, 9522910 - 9522946
Alignment:
Q  60 aaaaatcacataattcaatgtaattacaagtgtcggt 96  Q
    ||||||||||||||||| |||||||||||||||||||    
T  9522910 aaaaatcacataattcagtgtaattacaagtgtcggt 9522946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 60 - 96
Target Start/End: Original strand, 34595153 - 34595189
Alignment:
Q  60 aaaaatcacataattcaatgtaattacaagtgtcggt 96  Q
    ||||||||||||||||| |||||||||||||||||||    
T  34595153 aaaaatcacataattcagtgtaattacaagtgtcggt 34595189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 62 - 101
Target Start/End: Complemental strand, 9911566 - 9911527
Alignment:
Q  62 aaatcacataattcaatgtaattacaagtgtcggtatcgt 101  Q
    ||||||||||||||| ||||||||||||||||||| ||||    
T  9911566 aaatcacataattcagtgtaattacaagtgtcggtgtcgt 9911527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 60 - 101
Target Start/End: Complemental strand, 9107410 - 9107369
Alignment:
Q  60 aaaaatcacataattcaatgtaattacaagtgtcggtatcgt 101  Q
    |||||||||| |||||| ||||||||||||||||||| ||||    
T  9107410 aaaaatcacaaaattcagtgtaattacaagtgtcggtgtcgt 9107369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 60 - 93
Target Start/End: Original strand, 31384939 - 31384972
Alignment:
Q  60 aaaaatcacataattcaatgtaattacaagtgtc 93  Q
    ||||||||||||||||| ||||||||||||||||    
T  31384939 aaaaatcacataattcagtgtaattacaagtgtc 31384972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 60 - 92
Target Start/End: Complemental strand, 4118373 - 4118341
Alignment:
Q  60 aaaaatcacataattcaatgtaattacaagtgt 92  Q
    ||||||||||||||| |||||||||||||||||    
T  4118373 aaaaatcacataattaaatgtaattacaagtgt 4118341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 60 - 96
Target Start/End: Complemental strand, 7801196 - 7801160
Alignment:
Q  60 aaaaatcacataattcaatgtaattacaagtgtcggt 96  Q
    |||||||||||||||||  ||||||||||||||||||    
T  7801196 aaaaatcacataattcagcgtaattacaagtgtcggt 7801160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 60 - 96
Target Start/End: Complemental strand, 7977870 - 7977834
Alignment:
Q  60 aaaaatcacataattcaatgtaattacaagtgtcggt 96  Q
    |||||| |||||||||| |||||||||||||||||||    
T  7977870 aaaaattacataattcagtgtaattacaagtgtcggt 7977834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 61 - 101
Target Start/End: Original strand, 9617454 - 9617494
Alignment:
Q  61 aaaatcacataattcaatgtaattacaagtgtcggtatcgt 101  Q
    ||||||||||||||||||||||||| | |||||||| ||||    
T  9617454 aaaatcacataattcaatgtaattatatgtgtcggtgtcgt 9617494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 60 - 96
Target Start/End: Complemental strand, 15489772 - 15489736
Alignment:
Q  60 aaaaatcacataattcaatgtaattacaagtgtcggt 96  Q
    |||||| ||| ||||||||||||||||||||||||||    
T  15489772 aaaaattacacaattcaatgtaattacaagtgtcggt 15489736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 60 - 96
Target Start/End: Original strand, 16833327 - 16833363
Alignment:
Q  60 aaaaatcacataattcaatgtaattacaagtgtcggt 96  Q
    |||||||||||| |||| |||||||||||||||||||    
T  16833327 aaaaatcacatacttcagtgtaattacaagtgtcggt 16833363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 61 - 101
Target Start/End: Original strand, 19369837 - 19369877
Alignment:
Q  61 aaaatcacataattcaatgtaattacaagtgtcggtatcgt 101  Q
    ||||| ||||||||||||||||| |||||||||||| ||||    
T  19369837 aaaatgacataattcaatgtaatcacaagtgtcggtgtcgt 19369877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 60 - 96
Target Start/End: Original strand, 28715314 - 28715350
Alignment:
Q  60 aaaaatcacataattcaatgtaattacaagtgtcggt 96  Q
    |||||| |||||||||| |||||||||||||||||||    
T  28715314 aaaaatgacataattcagtgtaattacaagtgtcggt 28715350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000004; HSPs: 24)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 53 - 96
Target Start/End: Complemental strand, 12797385 - 12797342
Alignment:
Q  53 taattttaaaaatcacataattcaatgtaattacaagtgtcggt 96  Q
    |||||| ||||||||||||||||| |||||||||||||||||||    
T  12797385 taatttgaaaaatcacataattcagtgtaattacaagtgtcggt 12797342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 60 - 157
Target Start/End: Original strand, 28084541 - 28084640
Alignment:
Q  60 aaaaatcacataattcaatgtaattacaagtgtcggtatcgtatccgtg-tacttgtccgacatcgagacacgcctaattc-aggggtgtctgtgcttca 157  Q
    |||||||||||||||||||||||||||||||||| || |||| || |||  || |||||||||  | |||||||||||| | ||| ||||| ||||||||    
T  28084541 aaaaatcacataattcaatgtaattacaagtgtctgtgtcgtgtcggtgacacgtgtccgacactgggacacgcctaatccgaggagtgtccgtgcttca 28084640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 37 - 158
Target Start/End: Original strand, 4157145 - 4157266
Alignment:
Q  37 acactgatacaattagtaattttaaaaatcacataattcaatgtaattacaagtgtcggtatcgtatccgtgtacttgtccgacatcgagacacgcctaa 136  Q
    ||||||| |||| || |||||| ||||||||||||||| | || |||||||||||||||| ||| |  ||   || ||||||||| ||||| || |||||    
T  4157145 acactgacacaactaataatttgaaaaatcacataatttagtgcaattacaagtgtcggtgtcggacacg-acacatgtccgacaccgagaaacacctaa 4157243  T
Q  137 ttc-aggggtgtctgtgcttcat 158  Q
    ||| ||| |||||||||||||||    
T  4157244 ttcgaggagtgtctgtgcttcat 4157266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 60 - 160
Target Start/End: Complemental strand, 11596392 - 11596297
Alignment:
Q  60 aaaaatcacataattcaatgtaattacaagtgtcggtatcgtatccgtgtacttgtccgacatcgagacacgcctaat-tcaggggtgtctgtgcttcat 158  Q
    ||||||||||||||||| ||||||||||||||| ||| |      |||||  ||||||||||||| |||||||||||| | ||| ||||| |||||||||    
T  11596392 aaaaatcacataattcagtgtaattacaagtgtaggtgt------cgtgtcattgtccgacatcgggacacgcctaatctgaggagtgtccgtgcttcat 11596299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 42 - 92
Target Start/End: Original strand, 40481637 - 40481687
Alignment:
Q  42 gatacaattagtaattttaaaaatcacataattcaatgtaattacaagtgt 92  Q
    ||||||| || |||||| ||||||||||||||||| |||||||||||||||    
T  40481637 gatacaactaataatttgaaaaatcacataattcagtgtaattacaagtgt 40481687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 60 - 101
Target Start/End: Complemental strand, 12895156 - 12895115
Alignment:
Q  60 aaaaatcacataattcaatgtaattacaagtgtcggtatcgt 101  Q
    |||||||||||||||||| |||||||||||||||||| ||||    
T  12895156 aaaaatcacataattcaaagtaattacaagtgtcggtgtcgt 12895115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 60 - 96
Target Start/End: Original strand, 29205463 - 29205499
Alignment:
Q  60 aaaaatcacataattcaatgtaattacaagtgtcggt 96  Q
    ||||||||||||||||| |||||||||||||||||||    
T  29205463 aaaaatcacataattcagtgtaattacaagtgtcggt 29205499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 60 - 96
Target Start/End: Original strand, 42640548 - 42640584
Alignment:
Q  60 aaaaatcacataattcaatgtaattacaagtgtcggt 96  Q
    ||||||||||||||||| |||||||||||||||||||    
T  42640548 aaaaatcacataattcagtgtaattacaagtgtcggt 42640584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 42 - 93
Target Start/End: Original strand, 4383368 - 4383419
Alignment:
Q  42 gatacaattagtaattttaaaaatcacataattcaatgtaattacaagtgtc 93  Q
    ||||||| || |||||| ||||||||||||||||| ||||||||||| ||||    
T  4383368 gatacaactaataatttgaaaaatcacataattcagtgtaattacaaatgtc 4383419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 53 - 96
Target Start/End: Original strand, 16073406 - 16073449
Alignment:
Q  53 taattttaaaaatcacataattcaatgtaattacaagtgtcggt 96  Q
    |||||| ||||||| ||||||||| |||||||||||||||||||    
T  16073406 taatttgaaaaatcgcataattcagtgtaattacaagtgtcggt 16073449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 61 - 96
Target Start/End: Complemental strand, 24613740 - 24613705
Alignment:
Q  61 aaaatcacataattcaatgtaattacaagtgtcggt 96  Q
    |||||||||||||||||||||| |||||||||||||    
T  24613740 aaaatcacataattcaatgtaagtacaagtgtcggt 24613705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 60 - 102
Target Start/End: Complemental strand, 31800518 - 31800476
Alignment:
Q  60 aaaaatcacataattcaatgtaattacaagtgtcggtatcgta 102  Q
    |||||| | |||||| |||||||||||||||||||||||||||    
T  31800518 aaaaattaaataatttaatgtaattacaagtgtcggtatcgta 31800476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 60 - 160
Target Start/End: Complemental strand, 23293026 - 23292926
Alignment:
Q  60 aaaaatcacataattcaatgtaattacaagtgtcggtatcgtatccgtgtacttgtccgacatcgagacacgcctaattc-aggggtgtctgtgcttcat 158  Q
    ||||||||||||||||| | ||||||||||||||||| ||| |  ||   || ||||||||| || |||||||||||| | ||| ||||| |||||||||    
T  23293026 aaaaatcacataattcagtataattacaagtgtcggtgtcggacacg-acacgtgtccgacaccgggacacgcctaatccgaggagtgtccgtgcttcat 23292928  T
Q  159 ag 160  Q
    ||    
T  23292927 ag 23292926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 60 - 93
Target Start/End: Complemental strand, 28964288 - 28964255
Alignment:
Q  60 aaaaatcacataattcaatgtaattacaagtgtc 93  Q
    ||||||||||||||||| ||||||||||||||||    
T  28964288 aaaaatcacataattcagtgtaattacaagtgtc 28964255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 60 - 101
Target Start/End: Original strand, 30298966 - 30299007
Alignment:
Q  60 aaaaatcacataattcaatgtaattacaagtgtcggtatcgt 101  Q
    |||||| |||||||||| ||||||||||||||||||| ||||    
T  30298966 aaaaatgacataattcagtgtaattacaagtgtcggtgtcgt 30299007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 60 - 101
Target Start/End: Original strand, 30327834 - 30327875
Alignment:
Q  60 aaaaatcacataattcaatgtaattacaagtgtcggtatcgt 101  Q
    |||||| |||||||||| ||||||||||||||||||| ||||    
T  30327834 aaaaatgacataattcagtgtaattacaagtgtcggtgtcgt 30327875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 60 - 92
Target Start/End: Complemental strand, 715647 - 715615
Alignment:
Q  60 aaaaatcacataattcaatgtaattacaagtgt 92  Q
    ||||||||||||||||| |||||||||||||||    
T  715647 aaaaatcacataattcagtgtaattacaagtgt 715615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 60 - 92
Target Start/End: Complemental strand, 752973 - 752941
Alignment:
Q  60 aaaaatcacataattcaatgtaattacaagtgt 92  Q
    ||||||||||||||||| |||||||||||||||    
T  752973 aaaaatcacataattcagtgtaattacaagtgt 752941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 60 - 96
Target Start/End: Complemental strand, 6485651 - 6485615
Alignment:
Q  60 aaaaatcacataattcaatgtaattacaagtgtcggt 96  Q
    ||||||||||||||| | |||||||||||||||||||    
T  6485651 aaaaatcacataatttagtgtaattacaagtgtcggt 6485615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 60 - 96
Target Start/End: Complemental strand, 6879505 - 6879469
Alignment:
Q  60 aaaaatcacataattcaatgtaattacaagtgtcggt 96  Q
    ||||||||||||||| | |||||||||||||||||||    
T  6879505 aaaaatcacataattaagtgtaattacaagtgtcggt 6879469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 60 - 96
Target Start/End: Original strand, 21945522 - 21945558
Alignment:
Q  60 aaaaatcacataattcaatgtaattacaagtgtcggt 96  Q
    |||||| |||||||||| |||||||||||||||||||    
T  21945522 aaaaatgacataattcagtgtaattacaagtgtcggt 21945558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 53 - 85
Target Start/End: Complemental strand, 32915653 - 32915621
Alignment:
Q  53 taattttaaaaatcacataattcaatgtaatta 85  Q
    |||||| ||||||||||||||||||||||||||    
T  32915653 taatttaaaaaatcacataattcaatgtaatta 32915621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 60 - 96
Target Start/End: Original strand, 49431045 - 49431081
Alignment:
Q  60 aaaaatcacataattcaatgtaattacaagtgtcggt 96  Q
    ||||||||||||||||| |||||||| ||||||||||    
T  49431045 aaaaatcacataattcagtgtaattaaaagtgtcggt 49431081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 60 - 96
Target Start/End: Complemental strand, 54580063 - 54580027
Alignment:
Q  60 aaaaatcacataattcaatgtaattacaagtgtcggt 96  Q
    ||||||||||||||||| |||||||| ||||||||||    
T  54580063 aaaaatcacataattcagtgtaattataagtgtcggt 54580027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0246 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0246
Description:

Target: scaffold0246; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 42 - 92
Target Start/End: Original strand, 19576 - 19626
Alignment:
Q  42 gatacaattagtaattttaaaaatcacataattcaatgtaattacaagtgt 92  Q
    ||||||| || |||||| ||||||||||||||||| |||||||||||||||    
T  19576 gatacaactaataatttgaaaaatcacataattcagtgtaattacaagtgt 19626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 60 - 94
Target Start/End: Original strand, 31084342 - 31084376
Alignment:
Q  60 aaaaatcacataattcaatgtaattacaagtgtcg 94  Q
    |||||||||||||||||||||||||||||||||||    
T  31084342 aaaaatcacataattcaatgtaattacaagtgtcg 31084376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 60 - 96
Target Start/End: Original strand, 6247641 - 6247677
Alignment:
Q  60 aaaaatcacataattcaatgtaattacaagtgtcggt 96  Q
    ||||||||||||||||| |||||||||||||||||||    
T  6247641 aaaaatcacataattcagtgtaattacaagtgtcggt 6247677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 62 - 98
Target Start/End: Complemental strand, 7218305 - 7218269
Alignment:
Q  62 aaatcacataattcaatgtaattacaagtgtcggtat 98  Q
    ||||||||||||||| |||||||||||||||||||||    
T  7218305 aaatcacataattcagtgtaattacaagtgtcggtat 7218269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 60 - 96
Target Start/End: Original strand, 8420046 - 8420082
Alignment:
Q  60 aaaaatcacataattcaatgtaattacaagtgtcggt 96  Q
    |||||| ||||||||||||||||||||||||||||||    
T  8420046 aaaaataacataattcaatgtaattacaagtgtcggt 8420082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 60 - 104
Target Start/End: Original strand, 10298588 - 10298632
Alignment:
Q  60 aaaaatcacataattcaatgtaattacaagtgtcggtatcgtatc 104  Q
    |||| ||||||||| |||||||||||||||||||||| |||||||    
T  10298588 aaaagtcacataatacaatgtaattacaagtgtcggtgtcgtatc 10298632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 60 - 96
Target Start/End: Original strand, 15884007 - 15884043
Alignment:
Q  60 aaaaatcacataattcaatgtaattacaagtgtcggt 96  Q
    ||||||||||||||||| |||||||||||||||||||    
T  15884007 aaaaatcacataattcagtgtaattacaagtgtcggt 15884043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 60 - 96
Target Start/End: Complemental strand, 21191096 - 21191060
Alignment:
Q  60 aaaaatcacataattcaatgtaattacaagtgtcggt 96  Q
    ||||||||||||||||| |||||||||||||||||||    
T  21191096 aaaaatcacataattcagtgtaattacaagtgtcggt 21191060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 60 - 100
Target Start/End: Complemental strand, 24906341 - 24906301
Alignment:
Q  60 aaaaatcacataattcaatgtaattacaagtgtcggtatcg 100  Q
    |||||| |||||||||| |||||||||||||||||||||||    
T  24906341 aaaaatgacataattcagtgtaattacaagtgtcggtatcg 24906301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 60 - 94
Target Start/End: Complemental strand, 21576785 - 21576751
Alignment:
Q  60 aaaaatcacataattcaatgtaattacaagtgtcg 94  Q
    ||||||||||||||||| |||||||||||||||||    
T  21576785 aaaaatcacataattcagtgtaattacaagtgtcg 21576751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 60 - 101
Target Start/End: Complemental strand, 13287439 - 13287398
Alignment:
Q  60 aaaaatcacataattcaatgtaattacaagtgtcggtatcgt 101  Q
    ||||||||||||||||| ||||| ||||||||||||| ||||    
T  13287439 aaaaatcacataattcagtgtaactacaagtgtcggtgtcgt 13287398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 60 - 93
Target Start/End: Complemental strand, 15405095 - 15405062
Alignment:
Q  60 aaaaatcacataattcaatgtaattacaagtgtc 93  Q
    |||||||| |||||||||||||||||||||||||    
T  15405095 aaaaatcatataattcaatgtaattacaagtgtc 15405062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 60 - 93
Target Start/End: Original strand, 39698560 - 39698593
Alignment:
Q  60 aaaaatcacataattcaatgtaattacaagtgtc 93  Q
    ||||||||||||||||| ||||||||||||||||    
T  39698560 aaaaatcacataattcagtgtaattacaagtgtc 39698593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 60 - 96
Target Start/End: Complemental strand, 21351945 - 21351909
Alignment:
Q  60 aaaaatcacataattcaatgtaattacaagtgtcggt 96  Q
    |||| |||||||||||| |||||||||||||||||||    
T  21351945 aaaagtcacataattcagtgtaattacaagtgtcggt 21351909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 60 - 96
Target Start/End: Original strand, 30135333 - 30135369
Alignment:
Q  60 aaaaatcacataattcaatgtaattacaagtgtcggt 96  Q
    ||||||||||||| ||| |||||||||||||||||||    
T  30135333 aaaaatcacataactcattgtaattacaagtgtcggt 30135369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 43 - 98
Target Start/End: Complemental strand, 30136732 - 30136676
Alignment:
Q  43 atacaattagtaattttaaaaa-tcacataattcaatgtaattacaagtgtcggtat 98  Q
    |||||| ||||||||||||||| | || |||||||||||||||| || |||||||||    
T  30136732 atacaactagtaattttaaaaaattacgtaattcaatgtaattataaatgtcggtat 30136676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 60 - 96
Target Start/End: Original strand, 33178044 - 33178080
Alignment:
Q  60 aaaaatcacataattcaatgtaattacaagtgtcggt 96  Q
    ||||||||||||||| | |||||||||||||||||||    
T  33178044 aaaaatcacataatttagtgtaattacaagtgtcggt 33178080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 60 - 96
Target Start/End: Original strand, 42893379 - 42893415
Alignment:
Q  60 aaaaatcacataattcaatgtaattacaagtgtcggt 96  Q
    |||||||||||||| || |||||||||||||||||||    
T  42893379 aaaaatcacataatccagtgtaattacaagtgtcggt 42893415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0025 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 60 - 101
Target Start/End: Original strand, 23789 - 23830
Alignment:
Q  60 aaaaatcacataattcaatgtaattacaagtgtcggtatcgt 101  Q
    ||||||||||||||||| ||||||||||||||||||| ||||    
T  23789 aaaaatcacataattcagtgtaattacaagtgtcggtgtcgt 23830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000006; HSPs: 21)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 60 - 101
Target Start/End: Complemental strand, 21257026 - 21256985
Alignment:
Q  60 aaaaatcacataattcaatgtaattacaagtgtcggtatcgt 101  Q
    ||||||||||||||||| | ||||||||||||||||||||||    
T  21257026 aaaaatcacataattcagtataattacaagtgtcggtatcgt 21256985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 56 - 101
Target Start/End: Original strand, 27505261 - 27505306
Alignment:
Q  56 ttttaaaaatcacataattcaatgtaattacaagtgtcggtatcgt 101  Q
    ||||||||||||||||||| | ||||||||||||||||||| ||||    
T  27505261 ttttaaaaatcacataattaagtgtaattacaagtgtcggtgtcgt 27505306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 60 - 101
Target Start/End: Original strand, 28918020 - 28918061
Alignment:
Q  60 aaaaatcacataattcaatgtaattacaagtgtcggtatcgt 101  Q
    ||||||||||||||||| ||||||||||||||||||| ||||    
T  28918020 aaaaatcacataattcagtgtaattacaagtgtcggtgtcgt 28918061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 60 - 109
Target Start/End: Original strand, 34910336 - 34910385
Alignment:
Q  60 aaaaatcacataattcaatgtaattacaagtgtcggtatcgtatccgtgt 109  Q
    ||||||||||||||||| |||||||||||| |||||| ||||||| ||||    
T  34910336 aaaaatcacataattcagtgtaattacaagagtcggtgtcgtatcggtgt 34910385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 53 - 94
Target Start/End: Complemental strand, 35994785 - 35994744
Alignment:
Q  53 taattttaaaaatcacataattcaatgtaattacaagtgtcg 94  Q
    |||||| ||||||||||||||||| |||||||||||||||||    
T  35994785 taatttgaaaaatcacataattcagtgtaattacaagtgtcg 35994744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 60 - 101
Target Start/End: Complemental strand, 49651826 - 49651785
Alignment:
Q  60 aaaaatcacataattcaatgtaattacaagtgtcggtatcgt 101  Q
    ||||||||||||||||| ||||||||||||||||||| ||||    
T  49651826 aaaaatcacataattcactgtaattacaagtgtcggtgtcgt 49651785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 60 - 160
Target Start/End: Original strand, 55401094 - 55401194
Alignment:
Q  60 aaaaatcacataattcaatgtaattacaagtgtcggtatcgtatccgtgtacttgtccgacatcgagacacgcctaattc-aggggtgtctgtgcttcat 158  Q
    ||||||||||||||| | ||||||||||||||||||| ||| |  ||   || ||||||||| ||||||||||||||| | ||| ||||| |||||||||    
T  55401094 aaaaatcacataatttagtgtaattacaagtgtcggtgtcggacacg-acacgtgtccgacaccgagacacgcctaatccgaggagtgtccgtgcttcat 55401192  T
Q  159 ag 160  Q
    ||    
T  55401193 ag 55401194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 53 - 101
Target Start/End: Original strand, 14829701 - 14829749
Alignment:
Q  53 taattttaaaaatcacataattcaatgtaattacaagtgtcggtatcgt 101  Q
    |||||| |||||||||||||||||  |||||||||||||||||| ||||    
T  14829701 taatttgaaaaatcacataattcatggtaattacaagtgtcggtgtcgt 14829749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 60 - 96
Target Start/End: Original strand, 26508129 - 26508165
Alignment:
Q  60 aaaaatcacataattcaatgtaattacaagtgtcggt 96  Q
    ||||||||||||||||| |||||||||||||||||||    
T  26508129 aaaaatcacataattcagtgtaattacaagtgtcggt 26508165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 60 - 108
Target Start/End: Original strand, 39756255 - 39756303
Alignment:
Q  60 aaaaatcacataattcaatgtaattacaagtgtcggtatcgtatccgtg 108  Q
    ||||||||||||||| ||| ||||||||||||||||| |||| ||||||    
T  39756255 aaaaatcacataatttaatataattacaagtgtcggtgtcgtgtccgtg 39756303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 60 - 101
Target Start/End: Original strand, 1509558 - 1509599
Alignment:
Q  60 aaaaatcacataattcaatgtaattacaagtgtcggtatcgt 101  Q
    ||||||||||||||| | ||||||||||||||||||| ||||    
T  1509558 aaaaatcacataatttagtgtaattacaagtgtcggtgtcgt 1509599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 60 - 93
Target Start/End: Original strand, 14209132 - 14209165
Alignment:
Q  60 aaaaatcacataattcaatgtaattacaagtgtc 93  Q
    ||||||||||||||||| ||||||||||||||||    
T  14209132 aaaaatcacataattcagtgtaattacaagtgtc 14209165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 60 - 93
Target Start/End: Original strand, 14832118 - 14832151
Alignment:
Q  60 aaaaatcacataattcaatgtaattacaagtgtc 93  Q
    ||||||||||||| ||||||||||||||||||||    
T  14832118 aaaaatcacataactcaatgtaattacaagtgtc 14832151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 63 - 96
Target Start/End: Original strand, 25775531 - 25775564
Alignment:
Q  63 aatcacataattcaatgtaattacaagtgtcggt 96  Q
    |||||||||||||| |||||||||||||||||||    
T  25775531 aatcacataattcagtgtaattacaagtgtcggt 25775564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 60 - 101
Target Start/End: Complemental strand, 34185163 - 34185122
Alignment:
Q  60 aaaaatcacataattcaatgtaattacaagtgtcggtatcgt 101  Q
    |||||||||| |||||| ||||||||||||||||||| ||||    
T  34185163 aaaaatcacacaattcagtgtaattacaagtgtcggtgtcgt 34185122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 60 - 92
Target Start/End: Complemental strand, 4987331 - 4987299
Alignment:
Q  60 aaaaatcacataattcaatgtaattacaagtgt 92  Q
    ||||||||||||||||| |||||||||||||||    
T  4987331 aaaaatcacataattcagtgtaattacaagtgt 4987299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 60 - 96
Target Start/End: Complemental strand, 8587061 - 8587025
Alignment:
Q  60 aaaaatcacataattcaatgtaattacaagtgtcggt 96  Q
    ||||||||||||||| | |||||||||||||||||||    
T  8587061 aaaaatcacataattaagtgtaattacaagtgtcggt 8587025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 60 - 96
Target Start/End: Original strand, 8593156 - 8593192
Alignment:
Q  60 aaaaatcacataattcaatgtaattacaagtgtcggt 96  Q
    ||||||||||||||||| | |||||||||||||||||    
T  8593156 aaaaatcacataattcagtataattacaagtgtcggt 8593192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 60 - 96
Target Start/End: Original strand, 10954971 - 10955007
Alignment:
Q  60 aaaaatcacataattcaatgtaattacaagtgtcggt 96  Q
    ||||||||||||||||| |||||| ||||||||||||    
T  10954971 aaaaatcacataattcagtgtaatcacaagtgtcggt 10955007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 60 - 96
Target Start/End: Original strand, 20503484 - 20503520
Alignment:
Q  60 aaaaatcacataattcaatgtaattacaagtgtcggt 96  Q
    |||||| |||||||||| |||||||||||||||||||    
T  20503484 aaaaatgacataattcagtgtaattacaagtgtcggt 20503520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 60 - 96
Target Start/End: Complemental strand, 51206393 - 51206357
Alignment:
Q  60 aaaaatcacataattcaatgtaattacaagtgtcggt 96  Q
    ||||||||||||||||| ||||| |||||||||||||    
T  51206393 aaaaatcacataattcagtgtaaatacaagtgtcggt 51206357  T

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Target: scaffold0021 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0021
Description:

Target: scaffold0021; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 60 - 96
Target Start/End: Original strand, 130501 - 130537
Alignment:
Q  60 aaaaatcacataattcaatgtaattacaagtgtcggt 96  Q
    ||||||||||||||||| |||||||||||||||||||    
T  130501 aaaaatcacataattcagtgtaattacaagtgtcggt 130537  T

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Target: scaffold0223 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0223
Description:

Target: scaffold0223; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 60 - 93
Target Start/End: Original strand, 20191 - 20224
Alignment:
Q  60 aaaaatcacataattcaatgtaattacaagtgtc 93  Q
    ||||||||||||||||| ||||||||||||||||    
T  20191 aaaaatcacataattcagtgtaattacaagtgtc 20224  T

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Target: scaffold0171 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0171
Description:

Target: scaffold0171; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 60 - 101
Target Start/End: Original strand, 23439 - 23480
Alignment:
Q  60 aaaaatcacataattcaatgtaattacaagtgtcggtatcgt 101  Q
    ||||||||||||||||| |||||||| |||||||||| ||||    
T  23439 aaaaatcacataattcagtgtaattataagtgtcggtgtcgt 23480  T

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Target: scaffold0136 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0136
Description:

Target: scaffold0136; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 60 - 93
Target Start/End: Complemental strand, 3889 - 3856
Alignment:
Q  60 aaaaatcacataattcaatgtaattacaagtgtc 93  Q
    ||||||||||||||||| ||||||||||||||||    
T  3889 aaaaatcacataattcagtgtaattacaagtgtc 3856  T

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Target: scaffold0004 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 63 - 96
Target Start/End: Original strand, 123650 - 123683
Alignment:
Q  63 aatcacataattcaatgtaattacaagtgtcggt 96  Q
    |||||||||||||| |||||||||||||||||||    
T  123650 aatcacataattcagtgtaattacaagtgtcggt 123683  T

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Target: scaffold0793 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0793
Description:

Target: scaffold0793; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 60 - 92
Target Start/End: Complemental strand, 4923 - 4891
Alignment:
Q  60 aaaaatcacataattcaatgtaattacaagtgt 92  Q
    ||||||||||||||||| |||||||||||||||    
T  4923 aaaaatcacataattcagtgtaattacaagtgt 4891  T

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Target: scaffold0652 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0652
Description:

Target: scaffold0652; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 60 - 96
Target Start/End: Complemental strand, 502 - 466
Alignment:
Q  60 aaaaatcacataattcaatgtaattacaagtgtcggt 96  Q
    |||||||||| |||||| |||||||||||||||||||    
T  502 aaaaatcacaaaattcagtgtaattacaagtgtcggt 466  T

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Target: scaffold0123 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0123
Description:

Target: scaffold0123; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 61 - 101
Target Start/End: Complemental strand, 44564 - 44524
Alignment:
Q  61 aaaatcacataattcaatgtaattacaagtgtcggtatcgt 101  Q
    |||||||||||||||| |||||||| | |||||||||||||    
T  44564 aaaatcacataattcagtgtaattatatgtgtcggtatcgt 44524  T

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Target: scaffold0103 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0103
Description:

Target: scaffold0103; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 60 - 92
Target Start/End: Original strand, 51830 - 51862
Alignment:
Q  60 aaaaatcacataattcaatgtaattacaagtgt 92  Q
    ||||||||||||||||| |||||||||||||||    
T  51830 aaaaatcacataattcagtgtaattacaagtgt 51862  T

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Target: scaffold0027 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 60 - 96
Target Start/End: Original strand, 46701 - 46737
Alignment:
Q  60 aaaaatcacataattcaatgtaattacaagtgtcggt 96  Q
    ||||||||||||||||| ||||||||||| |||||||    
T  46701 aaaaatcacataattcagtgtaattacaaatgtcggt 46737  T

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Target: scaffold0011 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 60 - 96
Target Start/End: Complemental strand, 17789 - 17753
Alignment:
Q  60 aaaaatcacataattcaatgtaattacaagtgtcggt 96  Q
    ||||||||||||||| | |||||||||||||||||||    
T  17789 aaaaatcacataatttagtgtaattacaagtgtcggt 17753  T

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