View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3308_low_2 (Length: 763)
Name: NF3308_low_2
Description: NF3308
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3308_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 504; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 504; E-Value: 0
Query Start/End: Original strand, 237 - 755
Target Start/End: Original strand, 53037341 - 53037860
Alignment:
| Q |
237 |
cctagcaatggtcgaggttatacgagatatgaaaccttaaccggtcatgtttggagaagtgcaagtaaagctagagggcatgcaa-tgaccaacaaactt |
335 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
53037341 |
cctagcaatggtcgaggttatacgagatatgaaaccttaaccggtcatgtttggagaagtgcaagtaaagctagagggcatgcaaatgaccaacaaactt |
53037440 |
T |
|
| Q |
336 |
cgcttggtgtttgtgttgattggaggaatcgtgtggagcctaatttaccaaaagggtattttgggaatgggactttggatgttgtggctactagtcttgc |
435 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53037441 |
cgcttggtgtttgtgttgattggaggaatcgtgtggagcctaatttaccaaaagggtattttgggaatgggactttggatgttgtggctactagtcttgc |
53037540 |
T |
|
| Q |
436 |
aggggatttaatatctaagcctttagggtatgcttcaagtaggataagggaagcgattgagaaagtgaatgatgagtatgtgagaatgggaattgagtat |
535 |
Q |
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| T |
53037541 |
aggggatttaatatctaagcctttagggtatgcttcaagtaggataagggaagcgattgagaaagtgaatgatgagtatgtgagaatgggaatcgagtat |
53037640 |
T |
|
| Q |
536 |
tttaagaagcaagaggatttgactaagtttcaagatcttcatgctaagatggggagtgatgataaagggccattttatggaaatccaaatttaggagtgg |
635 |
Q |
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| T |
53037641 |
tttaagaagcaagaggatttgactaagtttcaagatcttcatgctaagatggggagtgatgataaagggccattttatgggaatccaaatttaggagtgg |
53037740 |
T |
|
| Q |
636 |
ttagttggttgacattgccaatttatggacttgattttggatgggggaaagaagtttatatggggccaggaacacatgattcagatggagattctttgct |
735 |
Q |
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| T |
53037741 |
ttagttggttgacattgccaatttatggacttgattttggatgggggaaagaagtttatatggggccaggaacacatgattcagatggagattctttgct |
53037840 |
T |
|
| Q |
736 |
tcttcctagttatgatgatg |
755 |
Q |
| |
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| T |
53037841 |
tcttcctagttatgatgatg |
53037860 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 225; E-Value: 1e-123
Query Start/End: Original strand, 237 - 745
Target Start/End: Complemental strand, 39996251 - 39995742
Alignment:
| Q |
237 |
cctagcaatggtcgaggttatacgagatatgaaaccttaaccggtcatgtttggagaagtgcaagtaaagctagagggcatgcaa-tgaccaacaaactt |
335 |
Q |
| |
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||||| ||||||||||||||| |||| |||||||| ||||||||||| |||||||||||||| ||||||| |||| |||| || |||||||| ||| |
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| T |
39996251 |
cctagtaatggtcgaggttattcgaggtatgaaacagtaaccggtcatatttggagaagtgcatgtaaagcaagagagcataaaaatgaccaaccaaccg |
39996152 |
T |
|
| Q |
336 |
cgcttggtgtttgtgttgattggaggaatcgtgtggagcctaatttaccaaaagggtattttgggaatgggactttggatgttgtggctactagtcttgc |
435 |
Q |
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| T |
39996151 |
cgcttggtgtttgtgttgattggaggcgtcgtgtggaacctaatttacctaaagggtattttgggaatgccattttagatgttttggctactagtctagc |
39996052 |
T |
|
| Q |
436 |
aggggatttaatatctaagcctttagggtatgcttcaagtaggataagggaagcgattgagaaagtgaatgatgagtatgtgagaatgggaattgagtat |
535 |
Q |
| |
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||| |||||||| ||||| || ||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||| | || |||| | |||||| |
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| T |
39996051 |
aggtgatttaatgtctaaacccttagggtatgcttcaagtaggataagggaagcggttgagaaagtgaacgatgagtatattaggttggggaatgagtac |
39995952 |
T |
|
| Q |
536 |
tttaagaagcaagaggatttgactaagtttcaagatcttcatgctaagatggggagtgatgataaagggccattttatggaaatccaaatttaggagtgg |
635 |
Q |
| |
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|||||||||||||| |||||||||||||| ||||||||||| | | | |||| || ||| || ||||| |||||| | ||||| |||||||||||| |
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| T |
39995951 |
tttaagaagcaagaagatttgactaagttccaagatcttcaagtt---gtagggaatggtgagaaggggcctttttattggaatcctaatttaggagtga |
39995855 |
T |
|
| Q |
636 |
ttagttggttgacattgccaatttatggacttgattttggatgggggaaagaagtttatatggggccaggaacacatgattca---gatggagattcttt |
732 |
Q |
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|||||||||| |||||||||||||||||||||||||||| ||||| || || ||||||||||||| |||||||||||| | ||||||||||| || |
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| T |
39995854 |
ctagttggttgtcattgccaatttatggacttgattttgggtggggaaaggaggtttatatggggctaggaacacatgaagaacttgatggagattcatt |
39995755 |
T |
|
| Q |
733 |
gcttcttcctagt |
745 |
Q |
| |
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||||||||||||| |
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| T |
39995754 |
gcttcttcctagt |
39995742 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 130; E-Value: 6e-67
Query Start/End: Original strand, 21 - 175
Target Start/End: Original strand, 53037125 - 53037279
Alignment:
| Q |
21 |
gagcctgtgagaacaatgccatattttgatataaacgtgatgtcgtcaaggtcaaatgttaatgttaatgaatgggagtttaatgaacctccgttattgt |
120 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53037125 |
gagcctgtgagaacaatgccatattttgatataaacgtgttgtcgtcaaggtcaaatgttaatgttaatgaatgggagtttaatgaacctccgttattgt |
53037224 |
T |
|
| Q |
121 |
taggaaattcgaataatgttgaagaaaggaagnnnnnnncaacggtggctatgct |
175 |
Q |
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| T |
53037225 |
taggaaattcgaataatgttgaagaaaggaagaaaaaaacaacggtggctatgct |
53037279 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 83 - 152
Target Start/End: Complemental strand, 39996405 - 39996336
Alignment:
| Q |
83 |
tgttaatgaatgggagtttaatgaacctccgttattgttaggaaattcgaataatgttgaagaaaggaag |
152 |
Q |
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||||||| |||||||| | || ||| ||| |||||||||||||||| | |||||||||||||||||||| |
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| T |
39996405 |
tgttaataaatgggagcctgatcaacttcctttattgttaggaaatttggataatgttgaagaaaggaag |
39996336 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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