View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3308_low_20 (Length: 426)

Name: NF3308_low_20
Description: NF3308
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3308_low_20
NF3308_low_20
[»] chr6 (4 HSPs)
chr6 (1-411)||(33839661-33840065)
chr6 (1-411)||(33843641-33844057)
chr6 (360-411)||(33843581-33843632)
chr6 (182-276)||(10812039-10812133)
[»] chr4 (10 HSPs)
chr4 (95-286)||(55966540-55966731)
chr4 (96-270)||(36636452-36636626)
chr4 (153-286)||(36910013-36910146)
chr4 (94-276)||(35968715-35968897)
chr4 (148-286)||(36665402-36665540)
chr4 (153-285)||(18364663-18364795)
chr4 (153-285)||(36598130-36598262)
chr4 (153-273)||(36629780-36629900)
chr4 (174-286)||(36643125-36643237)
chr4 (331-402)||(36636320-36636391)
[»] chr1 (1 HSPs)
chr1 (98-286)||(42602376-42602564)


Alignment Details
Target: chr6 (Bit Score: 364; Significance: 0; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 1 - 411
Target Start/End: Complemental strand, 33840065 - 33839661
Alignment:
Q  1 tagtgatctccttatgccatgtgtgtcctcatgtcgggctcttacatctctgacactttcgatttacaatgattgcatttttcctgatacagtaatattt 100  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||| |||||||||||||||||||      |||    
T  33840065 tagtgatctccttatgccatgtgtgtcctcatgtcaggctcttacatctctgacgctttcgatttacaatggttgcatttttcctgataca------ttt 33839972  T
Q  101 ccgaaatatctgaatatgccagcgttaaccagcttggatctaactggtttcaccttctgcggtgatgaagaccgttgtgctgagcccttttcagccttta 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  33839971 ccgaaatatctgaatatgccagcgttaaccagcttggatctaactggtttcaccttctgcggtgatgaaaaccgttgtgctgagcccttttcagccttta 33839872  T
Q  201 ccaagttgaatagcttgatcattagtcgttgtatggttaaggatgcacaaatcctccggatatcaagtgagacactagacaatttatatttgtataagaa 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33839871 ccaagttgaatagcttgatcattagtcgttgtatggttaaggatgcacaaatcctccggatatcaagtgagacactagacaatttatatttgtataagaa 33839772  T
Q  301 tttattcaactttgacaaaatcgagctagctgctccgagactctgtacctttactttttatggtactcctaaacagaaaatatgtgggagtggattttct 400  Q
    ||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33839771 tttattcaactttgacaaaatcgagctagctgctccgagtctctgcacctttactttttatggtactcctaaacagaaaatatgtgggagtggattttct 33839672  T
Q  401 tccgttaaaga 411  Q
    |||||||||||    
T  33839671 tccgttaaaga 33839661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 1 - 411
Target Start/End: Complemental strand, 33844057 - 33843641
Alignment:
Q  1 tagtgatctccttatgccatgtgtgtcctcatgtcgggctcttacatctctgacactttcgatttacaa------tgattgcatttttcctgatacagta 94  Q
    ||||||||||||||||||||||||||| ||||||| |||||||||||||||||  |||||| ||||| |      | ||    ||| |||||| ||| ||    
T  33844057 tagtgatctccttatgccatgtgtgtcttcatgtctggctcttacatctctgatgctttcggtttaccacatccgtcatgttgtttatcctgagacaata 33843958  T
Q  95 atatttccgaaatatctgaatatgccagcgttaaccagcttggatctaactggtttcaccttctgcggtgatgaagaccgttgtgctgagcccttttcag 194  Q
    ||||||||||||| ||||||| ||||||||||||| ||||||| ||||  |||||| |||||||||||||||||| |  ||||||||||||||||||| |    
T  33843957 atatttccgaaatctctgaatttgccagcgttaactagcttgggtctagttggttttaccttctgcggtgatgaaaatggttgtgctgagcccttttctg 33843858  T
Q  195 cctttaccaagttgaatagcttgatcattagtcgttgtatggttaaggatgcacaaatcctccggatatcaagtgagacactagacaatttatatttgta 294  Q
    |||||||||||||||||| |||| ||||||    ||||||  |||||||||||||||||||| ||||||||||| |||||||||||| ||||| | ||      
T  33843857 cctttaccaagttgaataacttgctcattaaggattgtattattaaggatgcacaaatcctcaggatatcaagtaagacactagacagtttatctatgag 33843758  T
Q  295 taagaatttattcaactttgacaaaatcgagctagctgctccgagactctgtacctttactttttatggtactcctaaacagaaaatatgtgggagtgga 394  Q
    | | ||||||||| ||||  ||||||||||||||||||||||||  || |||||||||||||||| |||||||| | | |||||||||| || |||||||    
T  33843757 ttataatttattcgacttcaacaaaatcgagctagctgctccgaatctttgtacctttactttttgtggtactcttgatcagaaaatatatgcgagtgga 33843658  T
Q  395 ttttcttccgttaaaga 411  Q
    |||||||| ||||||||    
T  33843657 ttttcttctgttaaaga 33843641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 360 - 411
Target Start/End: Complemental strand, 33843632 - 33843581
Alignment:
Q  360 atggtactcctaaacagaaaatatgtgggagtggattttcttccgttaaaga 411  Q
    ||||||||||| | |||||||||| |||||||||||||||||| ||||||||    
T  33843632 atggtactcctgatcagaaaatatatgggagtggattttcttctgttaaaga 33843581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 182 - 276
Target Start/End: Complemental strand, 10812133 - 10812039
Alignment:
Q  182 gagcccttttcagcctttaccaagttgaatagcttgatcattagtcgttgtatggttaaggatgcacaaatcctccggatatcaagtgagacact 276  Q
    |||||||| || ||||||||||| ||||| || ||||||||| || |||||| ||| | |||  |||||||| ||   |||||||||||||||||    
T  10812133 gagcccttctcggcctttaccaaattgaagagtttgatcattcgtggttgtaaggtaatggacacacaaatcatcaacatatcaagtgagacact 10812039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 72; Significance: 1e-32; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 95 - 286
Target Start/End: Complemental strand, 55966731 - 55966540
Alignment:
Q  95 atatttccgaaatatctgaatatgccagcgttaaccagcttggatctaactggtttcaccttctgcggtgatgaagaccgttgtgctgagcccttttcag 194  Q
    ||||||||||||| ||||| | ||||||| ||||||||||||  |||||    ||||| |||||||||||||||| || ||||||||||||||||||  |    
T  55966731 atatttccgaaatctctgattttgccagcattaaccagcttgagtctaaaaactttcatcttctgcggtgatgaaaacggttgtgctgagccctttttgg 55966632  T
Q  195 cctttaccaagttgaatagcttgatcattagtcgttgtatggttaaggatgcacaaatcctccggatatcaagtgagacactagacaattta 286  Q
     |||||||||||||| ||| ||| ||||| ||  ||||  ||| | |||||||||||| ||| ||||||||||| ||||||||| |||||||    
T  55966631 gctttaccaagttgagtagtttggtcattcgtgtttgtgaggtaagggatgcacaaattctcaggatatcaagttagacactaggcaattta 55966540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 96 - 270
Target Start/End: Complemental strand, 36636626 - 36636452
Alignment:
Q  96 tatttccgaaatatctgaatatgccagcgttaaccagcttggatctaactggtttcaccttctgcggtgatgaagaccgttgtgctgagcccttttcagc 195  Q
    ||||||| |||| | ||||| ||||| | ||||||| |||  |||||||   ||||| ||| ||||||| |||| |  ||||||||||||||||||  ||    
T  36636626 tatttccaaaatctttgaatttgccaacattaaccaacttatatctaacaaatttcaacttttgcggtggtgaaaatggttgtgctgagccctttttggc 36636527  T
Q  196 ctttaccaagttgaatagcttgatcattagtcgttgtatggttaaggatgcacaaatcctccggatatcaagtga 270  Q
    |||| ||||||||| ||| ||| ||||| || |||||| ||| | |||||||||||||||| |||||||||||||    
T  36636526 ctttcccaagttgactagtttggtcattcgtagttgtagggtaagggatgcacaaatcctcaggatatcaagtga 36636452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 153 - 286
Target Start/End: Original strand, 36910013 - 36910146
Alignment:
Q  153 ccttctgcggtgatgaagaccgttgtgctgagcccttttcagcctttaccaagttgaatagcttgatcattagtcgttgtatggttaaggatgcacaaat 252  Q
    |||| ||||||  |||| || ||||||||||||||||||  |||||||||||||||||||| ||| |||||||| | |||  ||| |||||||| |||||    
T  36910013 ccttttgcggtagtgaaaacggttgtgctgagccctttttcgcctttaccaagttgaatagtttggtcattagtagctgtgaggtaaaggatgctcaaat 36910112  T
Q  253 cctccggatatcaagtgagacactagacaattta 286  Q
    ||||   ||||||||||||||||| | |||||||    
T  36910113 cctcaacatatcaagtgagacacttgtcaattta 36910146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 94 - 276
Target Start/End: Original strand, 35968715 - 35968897
Alignment:
Q  94 aatatttccgaaatatctgaatatgccagcgttaaccagcttggatctaactggtttcaccttctgcggtgatgaagaccgttgtgctgagcccttttca 193  Q
    ||||||||| |||||| ||||| ||||||| || |||||||||||||||||   |||| |||| || |||||| || || | |||| ||| ||||||||     
T  35968715 aatatttccaaaatatttgaatttgccagcattgaccagcttggatctaacaaatttcgccttttggggtgataaaaacggctgtgttgaccccttttcc 35968814  T
Q  194 gcctttaccaagttgaatagcttgatcattagtcgttgtatggttaaggatgcacaaatcctccggatatcaagtgagacact 276  Q
    |||||||| ||||||||||| ||| || ||    |||||| | |  ||||||| |||||||||  ||||||||||||||||||    
T  35968815 gcctttactaagttgaatagtttggtcctttacggttgtaagatagaggatgctcaaatcctcaagatatcaagtgagacact 35968897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 148 - 286
Target Start/End: Complemental strand, 36665540 - 36665402
Alignment:
Q  148 tttcaccttctgcggtgatgaagaccgttgtgctgagcccttttcagcctttaccaagttgaatagcttgatcattagtcgttgtatggttaaggatgca 247  Q
    |||| |||||||||||| ||||  | ||||||||||||||||||| | |||||||| ||||||||| |||  | ||||| |||||| ||| ||||||||     
T  36665540 tttcgccttctgcggtggtgaaagcggttgtgctgagcccttttccgtctttaccatgttgaatagtttggcccttagtagttgtaaggtaaaggatgct 36665441  T
Q  248 caaatcctccggatatcaagtgagacactagacaattta 286  Q
    |||||||||   ||||||||||| ||||| | |||||||    
T  36665440 caaatcctcaccatatcaagtgatacacttgccaattta 36665402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 153 - 285
Target Start/End: Original strand, 18364663 - 18364795
Alignment:
Q  153 ccttctgcggtgatgaagaccgttgtgctgagcccttttcagcctttaccaagttgaatagcttgatcattagtcgttgtatggttaaggatgcacaaat 252  Q
    |||| ||||||| |||| || ||||||||||||||||||| |||||| ||||||||||||| ||| | |||  | |||||| ||| || ||||| |||||    
T  18364663 ccttttgcggtggtgaaaacggttgtgctgagcccttttccgcctttcccaagttgaatagtttggttatttctggttgtaaggtaaaagatgctcaaat 18364762  T
Q  253 cctccggatatcaagtgagacactagacaattt 285  Q
     ||| | ||||||||||||||||| | ||||||    
T  18364763 tctcagcatatcaagtgagacacttgtcaattt 18364795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 153 - 285
Target Start/End: Complemental strand, 36598262 - 36598130
Alignment:
Q  153 ccttctgcggtgatgaagaccgttgtgctgagcccttttcagcctttaccaagttgaatagcttgatcattagtcgttgtatggttaaggatgcacaaat 252  Q
    |||| ||||||| |||| || ||||||||||||||||||| |||||| ||||||||||||| ||| | |||  | |||||| ||| || ||||| |||||    
T  36598262 ccttttgcggtggtgaaaacggttgtgctgagcccttttccgcctttcccaagttgaatagtttggttatttctggttgtaaggtaaaagatgctcaaat 36598163  T
Q  253 cctccggatatcaagtgagacactagacaattt 285  Q
     ||| | ||||||||||||||||| | ||||||    
T  36598162 tctcagcatatcaagtgagacacttgtcaattt 36598130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 153 - 273
Target Start/End: Original strand, 36629780 - 36629900
Alignment:
Q  153 ccttctgcggtgatgaagaccgttgtgctgagcccttttcagcctttaccaagttgaatagcttgatcattagtcgttgtatggttaaggatgcacaaat 252  Q
    |||| ||||| | |||| || |||||||||||||||||||  ||||||| ||||||||||| |||||| || || |||||  ||| |||||||| |||||    
T  36629780 ccttttgcggcggtgaaaacggttgtgctgagcccttttcgacctttacaaagttgaatagtttgatccttcgtagttgtgaggtaaaggatgctcaaat 36629879  T
Q  253 cctccggatatcaagtgagac 273  Q
    |||| | ||||||||||||||    
T  36629880 cctcagcatatcaagtgagac 36629900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 174 - 286
Target Start/End: Complemental strand, 36643237 - 36643125
Alignment:
Q  174 gttgtgctgagcccttttcagcctttaccaagttgaatagcttgatcattagtcgttgtatggttaaggatgcacaaatcctccggatatcaagtgagac 273  Q
    |||||||||| |||||||  |||||| | ||||||||||| |||  |||| || |||||| | | |||||||| |||||||||   ||||||||||||||    
T  36643237 gttgtgctgatccctttttggcctttccaaagttgaatagtttgggcattcgttgttgtaagataaaggatgctcaaatcctcaacatatcaagtgagac 36643138  T
Q  274 actagacaattta 286  Q
    ||| | |||||||    
T  36643137 acttgtcaattta 36643125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 331 - 402
Target Start/End: Complemental strand, 36636391 - 36636320
Alignment:
Q  331 tgctccgagactctgtacctttactttttatggtactcctaaacagaaaatatgtgggagtggattttcttc 402  Q
    |||||| || || |||||||||||||||  ||||||||||   ||||||||||||||||||||  |||||||    
T  36636391 tgctccaagtctttgtacctttacttttactggtactcctgttcagaaaatatgtgggagtggtctttcttc 36636320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 98 - 286
Target Start/End: Complemental strand, 42602564 - 42602376
Alignment:
Q  98 tttccgaaatatctgaatatgccagcgttaaccagcttggatctaactggtttcaccttctgcggtgatgaagaccgttgtgctgagcccttttcagcct 197  Q
    ||||| |||| | ||||| |||| || || |||||||||||||| ||   |||  |||| |||||||||||| |  || ||||||| |||||||   |||    
T  42602564 tttccaaaatctttgaatttgccggcattgaccagcttggatctcacaaattttgccttttgcggtgatgaaaatggtcgtgctgaaccctttttgacct 42602465  T
Q  198 ttaccaagttgaatagcttgatcattagtcgttgtatggttaaggatgcacaaatcctccggatatcaagtgagacactagacaattta 286  Q
    |||||| ||||||||| ||| |||||||  |||||| ||| || ||||||||||||||| ||||||||||||||||||| | |||||||    
T  42602464 ttaccaggttgaatagtttggtcattagcagttgtacggtaaaagatgcacaaatcctcaggatatcaagtgagacacttgtcaattta 42602376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University