View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3308_low_21 (Length: 420)
Name: NF3308_low_21
Description: NF3308
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3308_low_21 |
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Alignment Details
Target: chr4 (Bit Score: 405; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 405; E-Value: 0
Query Start/End: Original strand, 1 - 405
Target Start/End: Original strand, 6603213 - 6603617
Alignment:
| Q |
1 |
ttatgtcctcgaccgcttccaaatcagctagatggctatgtgacaattggagagacaatcatgatgaaggaactgtttgttatgtggaagcaggtttggt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6603213 |
ttatgtcctcgaccgcttccaaatcagctagatggctatgtgacaattggagagacaatcatgatgaaggaactgtttgttatgtggaagcaggtttggt |
6603312 |
T |
|
| Q |
101 |
gtatgttaattggcttgcctcggttcctttaggttctaattcaaatgtgaatactcctccatgctggcaagattccaaaaacttgaccttactgtcgtgt |
200 |
Q |
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| T |
6603313 |
gtatgttaattggcttgcctcggttcctttaggttctaattcaaatgtgaatactcctccatgctggcaagattccaaaaacttgaccttactgtcgtgt |
6603412 |
T |
|
| Q |
201 |
ttttcgcatgcaaactggcaacttggtgactggtgtatgcttccagttgcagaccagaaggaacaagttgaacagatgattcgagattcgtctgatagtt |
300 |
Q |
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| T |
6603413 |
ttttcgcatgcaaactggcaacttggtgactggtgtatgcttccagttgcagaccagaaggaacaagttgaacagatgattcgagattcgtctgatagtt |
6603512 |
T |
|
| Q |
301 |
atcttcctaataagcatagtatggctagagaatgtaggagaagaaaccttaactctagcatggatgaattgtttataattgggaagataaagaccaaagt |
400 |
Q |
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| T |
6603513 |
atcttcctaataagcatagtatggctagagaatgtaggagaagaaaccttaactctagcatggatgaattgtttataattgggaagataaagaccaaagt |
6603612 |
T |
|
| Q |
401 |
tgata |
405 |
Q |
| |
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||||| |
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| T |
6603613 |
tgata |
6603617 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 5 - 235
Target Start/End: Original strand, 35440410 - 35440640
Alignment:
| Q |
5 |
gtcctcgaccgcttccaaatcagctagatggctatgtgacaattggagagacaatcatgatgaaggaactgtttgttatgtggaagcaggtttggtgtat |
104 |
Q |
| |
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| T |
35440410 |
gtcctccaacgcttctaaatcagcaggatggctatgtggaacttggagagacaatcaagatgaaggaactgtttgtgctgttgatgcaagtttggtgtgt |
35440509 |
T |
|
| Q |
105 |
gttaattggcttgcctcggttcctttaggttctaattcaaatgtgaatactcctccatgctggcaagattccaaaaacttgaccttactgtcgtgttttt |
204 |
Q |
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||||| ||||| || || |||| || ||| |||| |||| || |||| ||| |||||||||||||||||||| ||||| | ||||||| |||| |
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| T |
35440510 |
gttaactggctcgcttctgttctttcgggtagcaatttggctgtggatgctccaccaggctggcaagattccaaaaacctgaccgtgttgtcgtgctttt |
35440609 |
T |
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| Q |
205 |
cgcatgcaaactggcaacttggtgactggtg |
235 |
Q |
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| T |
35440610 |
catacacaaactggcagcttggtgactggtg |
35440640 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 366 - 403
Target Start/End: Original strand, 35440765 - 35440802
Alignment:
| Q |
366 |
gaattgtttataattgggaagataaagaccaaagttga |
403 |
Q |
| |
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||||| |||||||||||||||||||||||||||||||| |
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| T |
35440765 |
gaattttttataattgggaagataaagaccaaagttga |
35440802 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 377; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 5 - 405
Target Start/End: Complemental strand, 3700328 - 3699928
Alignment:
| Q |
5 |
gtcctcgaccgcttccaaatcagctagatggctatgtgacaattggagagacaatcatgatgaaggaactgtttgttatgtggaagcaggtttggtgtat |
104 |
Q |
| |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3700328 |
gtcctcgaccgcttctaaatcagctagatggctatgtgacaattggagagacaatcatgatgaaggaactgtttgttatgtggaagcaggtttggtgtat |
3700229 |
T |
|
| Q |
105 |
gttaattggcttgcctcggttcctttaggttctaattcaaatgtgaatactcctccatgctggcaagattccaaaaacttgaccttactgtcgtgttttt |
204 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3700228 |
gttaattggcttgcctcggttcctttaggttctaattcaaatgtgaatactcctccatgctggcaagattccaaaaacttgaccttactgtcgtgtttta |
3700129 |
T |
|
| Q |
205 |
cgcatgcaaactggcaacttggtgactggtgtatgcttccagttgcagaccagaaggaacaagttgaacagatgattcgagattcgtctgatagttatct |
304 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| || ||||||||||| |
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| T |
3700128 |
cgcatgcaaactggcaacttggtgactggtgtatgcttccagttgcagaccaaaaggaacaagttgaacagatgattcgagattcatcagatagttatct |
3700029 |
T |
|
| Q |
305 |
tcctaataagcatagtatggctagagaatgtaggagaagaaaccttaactctagcatggatgaattgtttataattgggaagataaagaccaaagttgat |
404 |
Q |
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| T |
3700028 |
tcctaataagcatagtatggctagagaatgtaggagaagaaaccttaactctagcaaggatgaattgtttataattgggaagataaagaccaaagttgat |
3699929 |
T |
|
| Q |
405 |
a |
405 |
Q |
| |
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| |
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|
| T |
3699928 |
a |
3699928 |
T |
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