View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3308_low_22 (Length: 411)

Name: NF3308_low_22
Description: NF3308
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3308_low_22
NF3308_low_22
[»] chr1 (4 HSPs)
chr1 (23-411)||(51378695-51379083)
chr1 (150-270)||(51406679-51406799)
chr1 (78-119)||(51406853-51406894)
chr1 (294-351)||(51790906-51790964)


Alignment Details
Target: chr1 (Bit Score: 365; Significance: 0; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 23 - 411
Target Start/End: Complemental strand, 51379083 - 51378695
Alignment:
Q  23 taagtccttgcaattagtaaggacttaaagagatgaatttgcctatttttactttgatcaatcattggagtcaatgttatttgaaagagacaacaaatgg 122  Q
    ||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51379083 taagtccttgcaattagtaaggacttaaagagatgaatttttctatttttactttgatcaatcattggagtcaatgttatttgaaagagacaacaaatgg 51378984  T
Q  123 tagtaatcgctgtaacattaattagttggttaagttatctttcgtatttgagcatcacactgtgtttgcgaaggaaagtctttaaagatcaatttttcta 222  Q
    ||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51378983 tagcaatcgctgtaacattaattagttggttaagttgtctttcgtatttgagcatcacactgtgtttgcgaaggaaagtctttaaagatcaatttttcta 51378884  T
Q  223 tctcctttgctctctcaatatgttattacccttattaattttagccaatacgtatcatatctgataccataccattctctgcatagttctgaactgcctt 322  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51378883 tctcctttgctctctcaatatgttattacccttattaattttagctaatacgtatcatatctgataccataccattctctgcatagttctgaactgcctt 51378784  T
Q  323 ccactcttcgcacatagtctgtaccaaattgacaatttctacagcagataacttcttttgattccgcatccaatcattccacttcaacc 411  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  51378783 ccactcttcgcacatagtctgtaccaaattgacaatttctacagcagataacttcttttgattccgcatccaatcattccaattcaacc 51378695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 150 - 270
Target Start/End: Complemental strand, 51406799 - 51406679
Alignment:
Q  150 ggttaagttatctttcgtatttgagcatcacactgtgtttgcgaaggaaagtctttaaagatcaatttttctatctcctttgctctctcaatatgttatt 249  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||    
T  51406799 ggttaagttatctttcgtatttgagcatcacactgtgtttgcgaaggaaagtctttaaagatcaatttttctatctcctttgctctctccatatgttgtt 51406700  T
Q  250 acccttattaattttagccaa 270  Q
    | |||||  |||||| |||||    
T  51406699 atccttaacaattttggccaa 51406679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 78 - 119
Target Start/End: Complemental strand, 51406894 - 51406853
Alignment:
Q  78 gatcaatcattggagtcaatgttatttgaaagagacaacaaa 119  Q
    |||||||||||||||||||| |||||||||||||||||||||    
T  51406894 gatcaatcattggagtcaatcttatttgaaagagacaacaaa 51406853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 294 - 351
Target Start/End: Original strand, 51790906 - 51790964
Alignment:
Q  294 ccattctctgcatagttctgaactg-ccttccactcttcgcacatagtctgtaccaaat 351  Q
    ||||||||||||||||||||||||| ||||||||||||| | ||| |||||||| ||||    
T  51790906 ccattctctgcatagttctgaactgcccttccactcttcccgcatggtctgtactaaat 51790964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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