View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3308_low_23 (Length: 410)
Name: NF3308_low_23
Description: NF3308
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3308_low_23 |
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Alignment Details
Target: chr6 (Bit Score: 375; Significance: 0; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 1 - 402
Target Start/End: Complemental strand, 7768664 - 7768258
Alignment:
| Q |
1 |
atcaagtcccgtgttgattaaagatgaagcctcgacagagtttataaagagtgacataacgggaatgatggtgtgatataaaggtatttacagcaaaaat |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||| |
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| T |
7768664 |
atcaagtcccgtgttgattaaagatgaagcctcgacagagtttataaagagtgacataacgggaacgatggcgtgatataaaggtatttacagcaaaaat |
7768565 |
T |
|
| Q |
101 |
atcaagtacatagccaaatgcctaaagtca-----gagactattcgctgtgaaattcccagctgccaacagacgcatcgcttgatttctagggagcaagc |
195 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7768564 |
atcaagtacatagccaaatgcctaaagtcaagtcagagactattcgctgtgaaattcccagctgccaacagacgcatcgcttgatttctagggagcaagc |
7768465 |
T |
|
| Q |
196 |
tgacaacagaagcgtggcttgatttcctgggagcactgttgctgcctttgttagactgcgatgaatcaatcttttgtctcttgttaattatgttcaaaaa |
295 |
Q |
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|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7768464 |
tgacaacagaagcgtggcttgatttcctggaagcactgttgctgcctttgttagactgcgatgaatcaatcttttgtctcttgttaattatgttcaaaaa |
7768365 |
T |
|
| Q |
296 |
tgcatctctccttgaaccatgcatattcttcacataagaaatggcagctttattttcaggattgtcatttgacttgtatgatgatcttttactgctactc |
395 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7768364 |
tgcatctctccttgaaccatgcatattcttcacataagaaatggcagctttattttcaggattgtcatttgacttgtatgatgatcttttactgctactc |
7768265 |
T |
|
| Q |
396 |
ctttgct |
402 |
Q |
| |
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||||||| |
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| T |
7768264 |
ctttgct |
7768258 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 213 - 379
Target Start/End: Complemental strand, 7779471 - 7779290
Alignment:
| Q |
213 |
cttgatttcctgggagcactgttgctgcctttgttagactgcgatgaatcaatcttttgtctcttgtt---------------aattatgttcaaaaatg |
297 |
Q |
| |
|
||||||||| ||||||||||||||| |||||||| ||||||||||||||| ||||||| |||||| || ||||||||||||||||| |
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| T |
7779471 |
cttgatttcttgggagcactgttgcggcctttgtcagactgcgatgaatcgatcttttttctcttatttttctgggaatcaccaattatgttcaaaaatg |
7779372 |
T |
|
| Q |
298 |
catctctccttgaaccatgcatattcttcacataagaaatggcagctttattttcaggattgtcatttgacttgtatgatga |
379 |
Q |
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||||||||||||||| |||||||||||| | | | | ||||||||||||||||||| ||||| ||||||||| |||||||| |
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| T |
7779371 |
catctctccttgaactatgcatattcttaatacacgcaatggcagctttattttcatgattgccatttgactgatatgatga |
7779290 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 301 - 402
Target Start/End: Complemental strand, 7774560 - 7774456
Alignment:
| Q |
301 |
ctctccttgaaccatgcatattcttcacataagaaatggcagctttattttcaggattgtcatttgactt---gtatgatgatcttttactgctactcct |
397 |
Q |
| |
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|||| |||||||||| ||||||||| | ||| | |||| |||||||||||| |||||||||||||||||| || || ||||||||||||||||||| |
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| T |
7774560 |
ctcttcttgaaccattcatattcttaagatatgcaatgtcagctttattttgaggattgtcatttgacttataataggaagatcttttactgctactccg |
7774461 |
T |
|
| Q |
398 |
ttgct |
402 |
Q |
| |
|
||||| |
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|
| T |
7774460 |
ttgct |
7774456 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 213 - 269
Target Start/End: Complemental strand, 7774660 - 7774604
Alignment:
| Q |
213 |
cttgatttcctgggagcactgttgctgcctttgttagactgcgatgaatcaatcttt |
269 |
Q |
| |
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||||||||| |||||||||||| ||||||||||| ||||||||| ||||| |||||| |
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|
| T |
7774660 |
cttgatttcttgggagcactgtcgctgcctttgtcagactgcgacgaatccatcttt |
7774604 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 103 - 149
Target Start/End: Original strand, 12815012 - 12815058
Alignment:
| Q |
103 |
caagtacatagccaaatgcctaaagtcagagactattcgctgtgaaa |
149 |
Q |
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|||||||| ||||||||||||||||||| ||||||||| |||||||| |
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| T |
12815012 |
caagtacacagccaaatgcctaaagtcaaagactattcactgtgaaa |
12815058 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 290 - 358
Target Start/End: Original strand, 12752229 - 12752297
Alignment:
| Q |
290 |
caaaaatgcatctctccttgaaccatgcatattcttcacataagaaatggcagctttattttcaggatt |
358 |
Q |
| |
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|||||||||| |||||||||||||| |||||||| | ||||| | ||||||||||||||| |||||| |
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| T |
12752229 |
caaaaatgcacctctccttgaaccaggcatattcctaacatatgccctggcagctttattttgaggatt |
12752297 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 290 - 358
Target Start/End: Original strand, 12815189 - 12815257
Alignment:
| Q |
290 |
caaaaatgcatctctccttgaaccatgcatattcttcacataagaaatggcagctttattttcaggatt |
358 |
Q |
| |
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|||||||||| |||||||||||||| |||||||| | ||||| | ||||||||||||||| |||||| |
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| T |
12815189 |
caaaaatgcacctctccttgaaccaggcatattcctaacatatgccctggcagctttattttgaggatt |
12815257 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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