View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3308_low_24 (Length: 409)
Name: NF3308_low_24
Description: NF3308
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3308_low_24 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 338; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 17 - 409
Target Start/End: Original strand, 52723883 - 52724272
Alignment:
| Q |
17 |
aactggatgatgaggttgtaatgttgaatatattggctacaatttcagggagatattttggacaatctgaaagttgaattcccagtttgcaacttaatga |
116 |
Q |
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| T |
52723883 |
aactggatgatgaggttgtaatgttgaatatattggctacaatttcagggagatattttggacaatctgaaaattgaattcccagtttgcaacttaatga |
52723982 |
T |
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| Q |
117 |
caatttatgttttagaattgggatggagccaagaacatgtatggctatatattttcagatgatgcataatgtctaatgtatgattgtaagaatttcaaaa |
216 |
Q |
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| T |
52723983 |
caatttatgttttagaattgggatggagccaagaacatgtatggc--tatattttcagatgatgcataatgtctaatgtatgattgtaagaatttcaaaa |
52724080 |
T |
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| Q |
217 |
tgcattgttatgttatactctagtattttgaccaag---tcattactgctttacaatttaagtacttgacaatagcaacatatcaggcgcgacacaattg |
313 |
Q |
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| T |
52724081 |
tgcattgttatgttatactctagtattttgaccaagtcatcattactgctttacaattttagtacttgacaatagcaacatatcaggcgcgacacaattg |
52724180 |
T |
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| Q |
314 |
ataatgataaagtaggtatttgacaattcacgtgtattatccattactggtgcaaatggaatgacaattggggagatatgaacccgttaaaattga |
409 |
Q |
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| T |
52724181 |
ataatgataaa----gtatttgacaattcatgtgtattatccattactggtgtaaatggaatgacaattggggagatatgaacccgttaaaattga |
52724272 |
T |
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