View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3308_low_3 (Length: 681)
Name: NF3308_low_3
Description: NF3308
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3308_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 584; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 584; E-Value: 0
Query Start/End: Original strand, 16 - 672
Target Start/End: Complemental strand, 38271320 - 38270664
Alignment:
| Q |
16 |
catgttaagacttttatatttcacataattgagtttcattatcttgtaattagtttacattaagcaaaggcttgattcttgcagaccatatatattaaat |
115 |
Q |
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| T |
38271320 |
catgttaagacttttatatttcacataattgagtttcattatcttgtaattagtttacattaagcaaaggcttgattcttgcagaccatatatattaaat |
38271221 |
T |
|
| Q |
116 |
attaaattcacgtgtcttcttctgttcagccggtttctttatccattcatatagcttacggcaaattgcgcatttgaccgagtaaaaaaggagctagttt |
215 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
38271220 |
attaaattcatgtgtcttcttctgttcagccggtttctttatccattcatatagcttacggcaaatttcgcatttgaccgagtaaaaaaggagctagttt |
38271121 |
T |
|
| Q |
216 |
ccaacagcaacaaggtgtgaannnnnnnaatagtgaaaggatctttggaatctggattgtttactcaattgactaagcttggaatctcagagttttttca |
315 |
Q |
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| T |
38271120 |
ccaacagcaacaaggtgtgaatttttttaatagtgaaaggatctttggaatcaggattgtttactcaattgactaagtttggaatctcagagttttttca |
38271021 |
T |
|
| Q |
316 |
agtgagatctataggacaaaagtaaggaacatagcatgatattcatataaagtgtttttctttctggaactgagaaaatggggtgttgtgtctcaacaag |
415 |
Q |
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| T |
38271020 |
agtgagatctatggtacaaaagtaatgaacatagcatgatattcatctaaagtgtttttctttctggaactgagaaaatggggtgttgtgtctcaacaag |
38270921 |
T |
|
| Q |
416 |
caatagaagtaatgacggttcggatattccatcttgtcttgaaatcggtttgtgtgctcaaaagaaagcaagaggaacattctctgatcatgttgtatct |
515 |
Q |
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| T |
38270920 |
caataaaagtaatgacggttcgcatattccatcttgtcttgaaatcgggttgtgtggtcaaaagaaagcaagaagaacattctctgatcatgttgtatct |
38270821 |
T |
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| Q |
516 |
ttgaacaagttagcatccttaccaaacagaatatttagtaatggaaagagtcggtcttcttgtatatttacgcagcagggtcgtaagggtgttaatcagg |
615 |
Q |
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| T |
38270820 |
ttgaacaagttagcatccttaccaaacagaatatttagtaatggaaagagtcggtcttcttgtatatttacgcagcagggtcgtaagggtgttaatcagg |
38270721 |
T |
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| Q |
616 |
atgctatgattgtatgggaagtaagtatgtttcatgttatggttgttttgatgatgt |
672 |
Q |
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| T |
38270720 |
atgctatgattgtatgggaagtaagtatgtttcatgttatggttgttttgatgatgt |
38270664 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 53; Significance: 5e-21; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 474 - 646
Target Start/End: Original strand, 14960282 - 14960454
Alignment:
| Q |
474 |
caaaagaaagcaagaggaacattctctgatcatgttgtatctttgaacaagttagcatccttaccaaacagaatatttagtaatggaaagagtcggtctt |
573 |
Q |
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||||||| |||||| ||||||| |||||||||| | | ||| | || | ||| |||||||||| | ||| || || | |||||||||||||||| || |
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| T |
14960282 |
caaaagagagcaaggagaacattttctgatcatgctatttctctacaccaattatcatccttacctagcaggattttcactaatggaaagagtcggggtt |
14960381 |
T |
|
| Q |
574 |
cttgtatatttacgcagcagggtcgtaagggtgttaatcaggatgctatgattgtatgggaagtaagtatgtt |
646 |
Q |
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| T |
14960382 |
cgtgcatatttacacagcagggtcgcaagggaattaatcaggatgccatggttgtgtgggaagtaagtatgtt |
14960454 |
T |
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