View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3308_low_33 (Length: 344)
Name: NF3308_low_33
Description: NF3308
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3308_low_33 |
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Alignment Details
Target: chr5 (Bit Score: 322; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 1 - 326
Target Start/End: Original strand, 18664275 - 18664600
Alignment:
| Q |
1 |
acatactacatgcaccaaaaaccccaataaacatttggccatcaggttttagtcctgaccttttaaattgagtaaataaatcaattgaatcttctgcaaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18664275 |
acatactacatgcaccaaaaaccccaataaacatttggccatcaggttttagtcctgaccttttaaattgagtaaataaatcaattgaatcttctgcaaa |
18664374 |
T |
|
| Q |
101 |
cccattcttagcgagctgctttatcataatatatatagtagtcaaatcgcgctcagtcatgttcttgaatacgttgactgcatcatctacagaaccacat |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18664375 |
cccattcttagcgagctgctttatcataatacatatagtagtcaaatcgcgctcagtcatgttcttgaatacgttgactgcatcatctacagaaccacat |
18664474 |
T |
|
| Q |
201 |
tgaaaatacatctccaatattccattgcatgtgctgactttaagaggtgacaaatgttgtaaaacatatctgtgtacaacttttgcctcttcaagagact |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18664475 |
tgaaaatacatctccaatattccattgcatgtgctgactttaagaggtgacaaatgttgtaaaacatatctgtgtacaacttttgcctcttcaagagact |
18664574 |
T |
|
| Q |
301 |
tggtcttcccacattgttgcattaat |
326 |
Q |
| |
|
|||||||||||||||||||||||||| |
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| T |
18664575 |
tggtcttcccacattgttgcattaat |
18664600 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 157 - 326
Target Start/End: Original strand, 18664731 - 18664900
Alignment:
| Q |
157 |
tcatgttcttgaatacgttgactgcatcatctacagaaccacattgaaaatacatctccaatattccattgcatgtgctgactttaagaggtgacaaatg |
256 |
Q |
| |
|
|||||||| |||| |||||||||||||||||||||||||||||||||||||||||||| ||||||| | ||||||||| ||| | |||||||||||||| |
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| T |
18664731 |
tcatgttcctgaacacgttgactgcatcatctacagaaccacattgaaaatacatctctaatattctaatgcatgtgcgaactgtgagaggtgacaaatg |
18664830 |
T |
|
| Q |
257 |
ttgtaaaacatatctgtgtacaacttttgcctcttcaagagacttggtcttcccacattgttgcattaat |
326 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||| ||| | ||| ||||| ||||||||||| |
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|
| T |
18664831 |
ttgtaaaacatatatgtgtacaacttttgcctcttcaagaaactcagcctttccacacagttgcattaat |
18664900 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 318; Significance: 1e-179; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 1 - 326
Target Start/End: Complemental strand, 15079553 - 15079228
Alignment:
| Q |
1 |
acatactacatgcaccaaaaaccccaataaacatttggccatcaggttttagtcctgaccttttaaattgagtaaataaatcaattgaatcttctgcaaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
15079553 |
acatactacatgcaccaaaaaccccaataaacatttggccatcaggttttagtcctgaccttttaaattgagtaaataaatcaattgaatcttctgcaaa |
15079454 |
T |
|
| Q |
101 |
cccattcttagcgagctgctttatcataatatatatagtagtcaaatcgcgctcagtcatgttcttgaatacgttgactgcatcatctacagaaccacat |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
15079453 |
cccattcttagcgagctgctttatcataatatatatagtagtcaaatcgcgttcattcatgttcttgaatacgttgactgcatcatctacagaaccacat |
15079354 |
T |
|
| Q |
201 |
tgaaaatacatctccaatattccattgcatgtgctgactttaagaggtgacaaatgttgtaaaacatatctgtgtacaacttttgcctcttcaagagact |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
15079353 |
tgaaaatacatctccaatattccattgcatgtgctgactttaagaggtgacaaatgttgtaaaacatatctgtgtacaacttttgcctcttcaagagact |
15079254 |
T |
|
| Q |
301 |
tggtcttcccacattgttgcattaat |
326 |
Q |
| |
|
|||||||||||||||||||||||||| |
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|
| T |
15079253 |
tggtcttcccacattgttgcattaat |
15079228 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 157 - 326
Target Start/End: Complemental strand, 15079097 - 15078928
Alignment:
| Q |
157 |
tcatgttcttgaatacgttgactgcatcatctacagaaccacattgaaaatacatctccaatattccattgcatgtgctgactttaagaggtgacaaatg |
256 |
Q |
| |
|
|||||||| |||| |||||||||||||||||||||||||||||||||||||||||||| ||||||| | ||||||||| |||| | |||||||||||||| |
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|
| T |
15079097 |
tcatgttcctgaacacgttgactgcatcatctacagaaccacattgaaaatacatctctaatattctaatgcatgtgcggactgtgagaggtgacaaatg |
15078998 |
T |
|
| Q |
257 |
ttgtaaaacatatctgtgtacaacttttgcctcttcaagagacttggtcttcccacattgttgcattaat |
326 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||| | ||| ||||| ||||||||||| |
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|
| T |
15078997 |
ttgtaaaacatatctgtgtacaacttttgcctcttcaagaaactcagcctttccacacagttgcattaat |
15078928 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 153; Significance: 5e-81; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 153; E-Value: 5e-81
Query Start/End: Original strand, 1 - 313
Target Start/End: Original strand, 7534824 - 7535136
Alignment:
| Q |
1 |
acatactacatgcaccaaaaaccccaataaacatttggccatcaggttttagtcctgaccttttaaattgagtaaataaatcaattgaatcttctgcaaa |
100 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||| ||| |
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|
| T |
7534824 |
acatactacatgcaccaaaaactccaataaacatttggccatcaggttttagtcccatgtttttaaattgagtaaatatatcaattgaatcttctggaaa |
7534923 |
T |
|
| Q |
101 |
cccattcttagcgagctgctttatcataatatatatagtagtcaaatcgcgctcagtcatgttcttgaatacgttgactgcatcatctacagaaccacat |
200 |
Q |
| |
|
||||||||| ||||| ||| |||||||| ||| ||||||||||||| ||||| |||| ||||||| |||| || ||||||||||| |||||||||| |
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|
| T |
7534924 |
cccattcttggcgagttgcattatcatagtatgccaagtagtcaaatcgtactcaggcatgctcttgaacacgtcgattgcatcatctagagaaccacat |
7535023 |
T |
|
| Q |
201 |
tgaaaatacatctccaatattccattgcatgtgctgactttaagaggtgacaaatgttgtaaaacatatctgtgtacaacttttgcctcttcaagagact |
300 |
Q |
| |
|
| ||||||||||||||||| || |||| |||||| || ||||||| ||||||||| ||| ||| ||||||||||||| |||||||||||||||||| |
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|
| T |
7535024 |
tcaaaatacatctccaatactctattgtctgtgctaaccgtaagaggatgcaaatgttgcaaagcatgtctgtgtacaactcttgcctcttcaagagact |
7535123 |
T |
|
| Q |
301 |
tggtcttcccaca |
313 |
Q |
| |
|
| ||||||||||| |
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|
| T |
7535124 |
tagtcttcccaca |
7535136 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 141; E-Value: 7e-74
Query Start/End: Original strand, 1 - 313
Target Start/End: Original strand, 7449286 - 7449598
Alignment:
| Q |
1 |
acatactacatgcaccaaaaaccccaataaacatttggccatcaggttttagtcctgaccttttaaattgagtaaataaatcaattgaatcttctgcaaa |
100 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||| |
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|
| T |
7449286 |
acatactacatgcaccaaaaactccaataaacatttggccatcaggttttagtcccatgtttttaaattgagtaaatatatcaattgaatcttctgcaaa |
7449385 |
T |
|
| Q |
101 |
cccattcttagcgagctgctttatcataatatatatagtagtcaaatcgcgctcagtcatgttcttgaatacgttgactgcatcatctacagaaccacat |
200 |
Q |
| |
|
|||||||| |||| ||| |||||||| ||| ||||||||||||| ||||| |||| ||||||| |||| || ||||||||||| |||||||||| |
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|
| T |
7449386 |
accattcttgacgagttgcattatcatagtatgccaagtagtcaaatcgtactcaggcatgctcttgaacacgtcgattgcatcatctagagaaccacat |
7449485 |
T |
|
| Q |
201 |
tgaaaatacatctccaatattccattgcatgtgctgactttaagaggtgacaaatgttgtaaaacatatctgtgtacaacttttgcctcttcaagagact |
300 |
Q |
| |
|
| ||||||||||||||||| || |||| |||||| || ||||||| ||||||||| ||| ||| ||||||||||||| ||||||| |||||||||| |
|
|
| T |
7449486 |
tcaaaatacatctccaatactctattgtctgtgctaaccgtaagaggatgcaaatgttgcaaagcatgtctgtgtacaactcttgcctcctcaagagact |
7449585 |
T |
|
| Q |
301 |
tggtcttcccaca |
313 |
Q |
| |
|
| | ||||||||| |
|
|
| T |
7449586 |
tagccttcccaca |
7449598 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 181 - 301
Target Start/End: Complemental strand, 27578246 - 27578126
Alignment:
| Q |
181 |
catcatctacagaaccacattgaaaatacatctccaatattccattgcatgtgctgactttaagaggtgacaaatgttgtaaaacatatctgtgtacaac |
280 |
Q |
| |
|
||||| ||||||||||||| | ||||||||||||| | ||| ||||||||| |||| ||| |||||| ||| ||||| ||| ||||||| ||||| || |
|
|
| T |
27578246 |
catcaactacagaaccacaattaaaatacatctcccaaattatattgcatgttctgaatttgagaggtaacacatgtttcaaagcatatctatgtacgac |
27578147 |
T |
|
| Q |
281 |
ttttgcctcttcaagagactt |
301 |
Q |
| |
|
|||| |||||||||||||||| |
|
|
| T |
27578146 |
tttttcctcttcaagagactt |
27578126 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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