View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3308_low_37 (Length: 306)
Name: NF3308_low_37
Description: NF3308
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3308_low_37 |
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Alignment Details
Target: chr2 (Bit Score: 271; Significance: 1e-151; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 10 - 288
Target Start/End: Original strand, 6013910 - 6014188
Alignment:
| Q |
10 |
aaatgaacgtatcttcaaaactttccttaatcttccacacacccaaaaaccattcacctcttttcaaattctcaaccttaatttctaccacaccacaaaa |
109 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6013910 |
aaatgaacgtatcttcaaaactttccttaatcttccacacacccaaaaaccattcacctcttttcaaattctcaaccttaatttctaccacaccacaaaa |
6014009 |
T |
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| Q |
110 |
cccaacaccgcacattctcacaaaatgcattgctctcttacaacactgtgcctcatccaaacaaaaactaaaacaaatccacgcattttccatacgtcac |
209 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6014010 |
cccatcaccgcacattctcacaaaatgcattgctctcttacaaaactgtgcctcatccaaacaaaaactaaaacaaatccacgcattttccatacgtcac |
6014109 |
T |
|
| Q |
210 |
aatgtcccactcaacaaccccgacatcggaaaataccttattttcaccattgtttccctctcagcaccaatgtcctacg |
288 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6014110 |
aatgtcccactcaacaaccccgacatcggaaaataccttattttcaccattgtttccctctcagcaccaatgtcctacg |
6014188 |
T |
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