View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3308_low_41 (Length: 282)

Name: NF3308_low_41
Description: NF3308
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3308_low_41
NF3308_low_41
[»] chr5 (16 HSPs)
chr5 (1-280)||(37412146-37412425)
chr5 (3-281)||(37391792-37392070)
chr5 (1-282)||(37429794-37430081)
chr5 (1-207)||(37640921-37641127)
chr5 (1-207)||(37595373-37595579)
chr5 (1-254)||(37534149-37534402)
chr5 (1-207)||(37399732-37399923)
chr5 (1-207)||(37712673-37712873)
chr5 (138-207)||(37697973-37698042)
chr5 (1-206)||(37703717-37703916)
chr5 (1-207)||(37824944-37825144)
chr5 (152-261)||(37436895-37437004)
chr5 (147-207)||(37381240-37381300)
chr5 (1-106)||(37436756-37436861)
chr5 (1-104)||(37697836-37697939)
chr5 (63-115)||(37381332-37381384)
[»] chr3 (1 HSPs)
chr3 (1-207)||(14554087-14554281)
[»] chr4 (2 HSPs)
chr4 (26-207)||(24216648-24216832)
chr4 (150-261)||(16841727-16841838)


Alignment Details
Target: chr5 (Bit Score: 256; Significance: 1e-142; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 1 - 280
Target Start/End: Complemental strand, 37412425 - 37412146
Alignment:
Q  1 aaattctttagcagcgacaaagaattctctctgatggaagacatatcaacactattcagatgaagctcgcttaaatttgtaacgttatgaatgagtttct 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||    
T  37412425 aaattctttagcagcgacaaagaattctctctgatggaagacatatcaacactattcagatgaagctcgcttaaatttgtaacattatgaatgagttcct 37412326  T
Q  101 tccatgtgaagggatcaagtttgagtttttgatccatgtaccagttactgctaagatcaagtgatactaattttgacaagtgagagattgtggaaggaat 200  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37412325 tccatgtgaagggatcaagtttgagtttttgatccatgtatcagttactgctaagatcaagtgatactaattttgacaagtgagagattgtggaaggaat 37412226  T
Q  201 attaccaatgatttcagtgttttataaattaagatgtgtgagattcaccaaatcactaatatcatcatgcaccgaagacc 280  Q
    ||||| ||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37412225 attacaaatgattccagtgtttgataaattaagatgtgtgagattcaccaaatcactaatatcatcatgcaccgaagacc 37412146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 3 - 281
Target Start/End: Complemental strand, 37392070 - 37391792
Alignment:
Q  3 attctttagcagcgacaaagaattctctctgatggaagacatatcaacactattcagatgaagctcgcttaaatttgtaacgttatgaatgagtttcttc 102  Q
    |||||||||||  ||||||||  ||||||| |||||| ||||||| || ||||||| ||||||||| |||||||| ||| | ||||||||||||||||||    
T  37392070 attctttagcatagacaaagagctctctctaatggaatacatatccactctattcaaatgaagctcccttaaattagtagcattatgaatgagtttcttc 37391971  T
Q  103 catgtgaagggatcaagtttgagtttttgatccatgtaccagttactgctaagatcaagtgatactaattttgacaagtgagagattgtggaaggaatat 202  Q
    ||||| || | |||||||||||||| ||| |||| || || || | ||||||||||||||||||||||||||||||| |||||||||||||| |||||||    
T  37391970 catgtcaatgtatcaagtttgagttgttgttccaagtgccggtaattgctaagatcaagtgatactaattttgacaaatgagagattgtggagggaatat 37391871  T
Q  203 taccaatgatttcagtgttttataaattaagatgtgtgagattcaccaaatcactaatatcatcatgcaccgaagaccc 281  Q
    ||||| |||  | |   ||| ||| ||| |||| |||||||||||| ||||||| |||| || ||||||  ||||||||    
T  37391870 taccactgaggtaacaatttgatagatttagatatgtgagattcactaaatcaccaataccaacatgcaatgaagaccc 37391792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 1 - 282
Target Start/End: Original strand, 37429794 - 37430081
Alignment:
Q  1 aaattctttagcagcgacaaagaattctctctgatggaagacatatcaacactattcagatgaagctcgcttaaatttgtaacgttatgaatgagtttct 100  Q
    |||||| ||||||||||||||||  ||||||||||  |||| ||||| ||| |||||| ||||||||| |||||||| ||| | ||| ||||||||||||    
T  37429794 aaattccttagcagcgacaaagatctctctctgattaaagatatatccacagtattcaaatgaagctcccttaaattagtagcattaagaatgagtttct 37429893  T
Q  101 tccatgtgaagggatcaagtttgagtttttgatccatgtaccagttact------gctaagatcaagtgatactaattttgacaagtgagagattgtgga 194  Q
    |||||||||  ||| |||||| |||||| || ||||||| ||||| |||      |||||||||||||||||||||||||||||| ||||||||||||||    
T  37429894 tccatgtgagtggaccaagttcgagtttctgttccatgttccagtaactataactgctaagatcaagtgatactaattttgacaaatgagagattgtgga 37429993  T
Q  195 aggaatattaccaatgatttcagtgttttataaattaagatgtgtgagattcaccaaatcactaatatcatcatgcaccgaagacccg 282  Q
     | |||||||||| | ||  | |||||| ||| ||| ||||||||||| ||||| | ||||| |||| || |||||||||||||||||    
T  37429994 ggaaatattaccactaatgccggtgtttgatagatttagatgtgtgagcttcactagatcaccaataccagcatgcaccgaagacccg 37430081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 1 - 207
Target Start/End: Original strand, 37640921 - 37641127
Alignment:
Q  1 aaattctttagcagcgacaaagaattctctctgatggaagacatatcaacactattcagatgaagctcgcttaaatttgtaacgttatgaatgagtttct 100  Q
    |||||||||||||  ||||||||  ||||  | |||||||||||||| |||||||||| ||||||||| |||||||| ||| | ||||||||||||||||    
T  37640921 aaattctttagcattgacaaagagctctccgtaatggaagacatatccacactattcaaatgaagctcccttaaattagtagcattatgaatgagtttct 37641020  T
Q  101 tccatgtgaagggatcaagtttgagttt---ttgatccatgtaccagttactgctaagatcaagtgatactaattttgacaagtgagagattgtggaagg 197  Q
    ||||  |||| | ||  ||||| | |     ||| ||   | |||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  37641021 tccaaatgaatgaattgagtttcaatcccacttgttc---ggaccagtaactgctaagatcaagtgatactaattttgacaaatgagagattgtggaagg 37641117  T
Q  198 aatattacca 207  Q
    ||||||||||    
T  37641118 aatattacca 37641127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 1 - 207
Target Start/End: Original strand, 37595373 - 37595579
Alignment:
Q  1 aaattctttagcagcgacaaagaattctctctgatggaagacatatcaacactattcagatgaagctcgcttaaatttgtaacgttatgaatgagtttct 100  Q
    |||||||||||||  ||||||||  ||||  | |||||||||||||| |||||||||| ||||||||| |||||||| ||| | ||||||||||||||||    
T  37595373 aaattctttagcatggacaaagagctctccgtaatggaagacatatccacactattcaaatgaagctcccttaaattagtagcattatgaatgagtttct 37595472  T
Q  101 tccatgtgaagggatcaagtttgagtttttgatccatgtaccagttactgctaagatcaagtgatactaattttgacaagtgagagattgtggaaggaat 200  Q
    ||||  |||| |  |  ||||| | |      ||   | |||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  37595473 tccaaatgaatgacttgagtttcaatcccacttcttcggaccagtaactgctaagatcaagtgatactaattttgacaaatgagagattgtggaaggaat 37595572  T
Q  201 attacca 207  Q
    |||||||    
T  37595573 attacca 37595579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 254
Target Start/End: Original strand, 37534149 - 37534402
Alignment:
Q  1 aaattctttagcagcgacaaagaattctctctgatggaagacatatcaacactattcagatgaagctcgcttaaatttgtaacgttatgaatgagtttct 100  Q
    |||||||||||||  ||||||||  ||||||||||||||||||| |  ||| ||| || || ||| || |||||||| ||| | ||||||||||||||||    
T  37534149 aaattctttagcattgacaaagagctctctctgatggaagacatgttcacattatccaaataaagttcccttaaattagtagcattatgaatgagtttct 37534248  T
Q  101 tccatgtgaagggatcaagtttgagtttttgatccatgtaccagttactgctaagatcaagtgatactaattttgacaagtgagagattgtggaaggaat 200  Q
    ||||  |||| | ||  ||||| | |      ||   | |||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  37534249 tccaaatgaacgaattgagtttcaatcccacttctgcggaccagtaactgctaagatcaagtgatactaattttgacaaatgagagattgtggaaggaat 37534348  T
Q  201 attaccaatgatttcagtgttttataaattaagatgtgtgagattcaccaaatc 254  Q
    ||||||| |||  |||| || | ||| ||| ||||||||||| ||||| |||||    
T  37534349 attaccactgaggtcagagtatgatagatttagatgtgtgagtttcactaaatc 37534402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 1 - 207
Target Start/End: Complemental strand, 37399923 - 37399732
Alignment:
Q  1 aaattctttagcagcgacaaagaattctctctgatggaagacatatcaacactattcagatgaagctcgcttaaatttgtaacgttatgaatgagtttct 100  Q
    |||||||||||||  ||||||||  ||||||||| ||||||||| |  ||| |||||| ||||||||| |||||||| ||| | ||||||||||||||||    
T  37399923 aaattctttagcattgacaaagagctctctctgagggaagacatgttcacaatattcaaatgaagctcccttaaattagtagcattatgaatgagtttct 37399824  T
Q  101 tccatgtgaagggatcaagtttgagtttttgatccatgtaccagttactgctaagatcaagtgatactaattttgacaagtgagagattgtggaaggaat 200  Q
    ||||||| || | |||||||| ||          ||      |||||  |||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  37399823 tccatgtcaatgaatcaagttcga----------caa-----agttaaagctaagatcaagtgatactaattttgacaaatgagagattgtggaaggaat 37399739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 1 - 207
Target Start/End: Original strand, 37712673 - 37712873
Alignment:
Q  1 aaattctttagcagcgacaaagaattctctctgatggaagacatatcaacactattcagatgaagctcgcttaaatttgtaacgttatgaatgagtttct 100  Q
    |||||||||||||  ||||||||  ||||||||||||||||||| |  ||| ||| || || ||| || |||||||| ||| | ||||||||||||||||    
T  37712673 aaattctttagcattgacaaagagctctctctgatggaagacatgttcacattatccaaataaagttcccttaaattagtagcattatgaatgagtttct 37712772  T
Q  101 tccatgtgaagggatcaagtttgagtttttgatccatgtaccagttactgctaagatcaagtgatactaattttgacaagtgagagattgtggaaggaat 200  Q
    ||||||| || ||||  ||||| | ||      |||  | ||    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  37712773 tccatgtcaatggatttagtttcaatt------ccacatccccaaaactgctaagatcaagtgatactaattttgacaaatgagagattgtggaaggaat 37712866  T
Q  201 attacca 207  Q
    |||||||    
T  37712867 attacca 37712873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 138 - 207
Target Start/End: Original strand, 37697973 - 37698042
Alignment:
Q  138 gtaccagttactgctaagatcaagtgatactaattttgacaagtgagagattgtggaaggaatattacca 207  Q
    |||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  37697973 gtaccagtaactgctaagatcaagtgatactaattttgacaaatgagagattgtggaaggaatattacca 37698042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 206
Target Start/End: Original strand, 37703717 - 37703916
Alignment:
Q  1 aaattctttagcagcgacaaagaattctctctgatggaagacatatcaacactattcagatgaagctcgcttaaatttgtaacgttatgaatgagtttct 100  Q
    |||||||||||||  ||||| ||  ||||  | |||||||||||||| |||||||||| ||||||||| |||||||| ||| | ||||||||||||||||    
T  37703717 aaattctttagcattgacaatgagctctccgtaatggaagacatatccacactattcaaatgaagctcccttaaattagtagcattatgaatgagtttct 37703816  T
Q  101 tccatgtgaagggatcaagtttgagtttttgatccatgtaccagttactgctaagatcaagtgatactaattttgacaagtgagagattgtggaaggaat 200  Q
    ||||||| || |||| || |||   | || ||     ||| |  | |||||||||||||||||||| |||||||||||| |||||||||||||| ||| |    
T  37703817 tccatgtcaacggattaa-tttccatgttcga-----gtaactataactgctaagatcaagtgatattaattttgacaaatgagagattgtggagggagt 37703910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 207
Target Start/End: Original strand, 37824944 - 37825144
Alignment:
Q  1 aaattctttagcagcgacaaagaattctctctgatggaagacatatcaacactattcagatgaagctcgcttaaatttgtaacgttatgaatgagtttct 100  Q
    |||||||||||||  ||||| ||  |||||| ||| |||||||| |  || | ||| |||||||| || |||||||| ||| | ||||||||||||||||    
T  37824944 aaattctttagcattgacaatgagctctctccgattgaagacatgttcactccattaagatgaagatcccttaaattagtagcattatgaatgagtttct 37825043  T
Q  101 tccatgtgaagggatcaagtttgagtttttgatccatgtaccagttactgctaagatcaagtgatactaattttgacaagtgagagattgtggaaggaat 200  Q
    ||||  |||| | ||  ||||| | |       ||| || |||||| ||||| |||||||||||||||||||||||||| ||||||||||||||||||||    
T  37825044 tccaaatgaatgaattgagtttcaatc------ccacgtgccagtttctgctgagatcaagtgatactaattttgacaaatgagagattgtggaaggaat 37825137  T
Q  201 attacca 207  Q
    |||||||    
T  37825138 attacca 37825144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 152 - 261
Target Start/End: Original strand, 37436895 - 37437004
Alignment:
Q  152 taagatcaagtgatactaattttgacaagtgagagattgtggaaggaatattaccaatgatttcagtgttttataaattaagatgtgtgagattcaccaa 251  Q
    |||||||||| ||||||||||||||||| ||||||||| ||||||||||||||||| |||  |||  || | |||  || ||||||||||| ||||| ||    
T  37436895 taagatcaagggatactaattttgacaaatgagagattttggaaggaatattaccactgaggtcacagtatgataggtttagatgtgtgagtttcactaa 37436994  T
Q  252 atcactaata 261  Q
    ||||||||||    
T  37436995 atcactaata 37437004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 147 - 207
Target Start/End: Complemental strand, 37381300 - 37381240
Alignment:
Q  147 actgctaagatcaagtgatactaattttgacaagtgagagattgtggaaggaatattacca 207  Q
    |||||| |||||||||||||||||||||||||| |||||||||||||| ||||||||||||    
T  37381300 actgctgagatcaagtgatactaattttgacaaatgagagattgtggagggaatattacca 37381240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 106
Target Start/End: Original strand, 37436756 - 37436861
Alignment:
Q  1 aaattctttagcagcgacaaagaattctctctgatggaagacatatcaacactattcagatgaagctcgcttaaatttgtaacgttatgaatgagtttct 100  Q
    |||||| ||| || |||||||||  ||||||  || |||||||| |  || | ||||||||||||||| |||||||| ||| | ||||||||||||||||    
T  37436756 aaattcgttaacaacgacaaagagctctctccaattgaagacattttcactccattcagatgaagctcccttaaattagtagcattatgaatgagtttct 37436855  T
Q  101 tccatg 106  Q
    ||||||    
T  37436856 tccatg 37436861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 37697836 - 37697939
Alignment:
Q  1 aaattctttagcagcgacaaagaattctctctgatggaagacatatcaacactattcagatgaagctcgcttaaatttgtaacgttatgaatgagtttct 100  Q
    |||||||||||||  ||||| ||  |||||| ||| |||||||| |  || | ||| |||||||| || |||||||| ||| | ||||||||||||||||    
T  37697836 aaattctttagcattgacaatgagctctctccgattgaagacatgttcactccattaagatgaagatcccttaaattagtagcattatgaatgagtttct 37697935  T
Q  101 tcca 104  Q
    ||||    
T  37697936 tcca 37697939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 63 - 115
Target Start/End: Complemental strand, 37381384 - 37381332
Alignment:
Q  63 aagctcgcttaaatttgtaacgttatgaatgagtttcttccatgtgaagggat 115  Q
    |||||| |||||||| ||| | ||||||||||||||||||||||| || ||||    
T  37381384 aagctcccttaaattagtagcattatgaatgagtttcttccatgtcaatggat 37381332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 207
Target Start/End: Original strand, 14554087 - 14554281
Alignment:
Q  1 aaattctttagcagcgacaaagaattctctctgatggaagacatatcaacactattcagatgaagctcgcttaaatttgtaacgttatgaatgagtttct 100  Q
    |||||||||||||  ||||||||  ||||||||||||||||||| |  || | |||||||| ||| || |||||||| ||| | |||||||||||||| |    
T  14554087 aaattctttagcattgacaaagagctctctctgatggaagacatgttcactccattcagataaagatcccttaaattagtagcattatgaatgagtttat 14554186  T
Q  101 tccatgtgaagggatcaagtttgagtttttgatccatgtaccagttactgctaagatcaagtgatactaattttgacaagtgagagattgtggaaggaat 200  Q
    ||||||| || |||| || ||            ||| | |||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  14554187 tccatgtaaatggattaattt------------ccaagaaccagttaatgctaagatcaagtgatactaattttgacaaatgagagattgtggaaggaat 14554274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 59; Significance: 5e-25; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 26 - 207
Target Start/End: Complemental strand, 24216832 - 24216648
Alignment:
Q  26 tctctctgatggaagacatatcaacactattcagatgaagctcgcttaaatttgtaacgttatgaatgagtttcttccatgtgaagggatcaagtttgag 125  Q
    |||||||||| ||||| || || || | |||||| | |||||| |||||||| ||| | |||||||||||||||||||||||||||  ||  ||||||||    
T  24216832 tctctctgattgaagatatgtccactccattcaggtaaagctcccttaaattagtagcattatgaatgagtttcttccatgtgaagatattgagtttgag 24216733  T
Q  126 tttttgatccatgtaccag---ttactgctaagatcaagtgatactaattttgacaagtgagagattgtggaaggaatattacca 207  Q
    |||||| ||||    ||||   | |||  ||||||||||||| |||| ||||||||| |||||||||||||| ||||||||||||    
T  24216732 tttttgttccaccggccagtaataacttttaagatcaagtgacactagttttgacaactgagagattgtggagggaatattacca 24216648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 150 - 261
Target Start/End: Complemental strand, 16841838 - 16841727
Alignment:
Q  150 gctaagatcaagtgatactaattttgacaagtgagagattgtggaaggaatattaccaatgatttcagtgttttataaattaagatgtgtgagattcacc 249  Q
    |||||||||||| ||||||||||||||||| ||||||||||||||  |||| | |||| |||  |||  || | ||| ||| |||||||||| ||||||     
T  16841838 gctaagatcaagagatactaattttgacaaatgagagattgtggagtgaatgtcaccattgaggtcacagtatgatagatttagatgtgtgatattcact 16841739  T
Q  250 aaatcactaata 261  Q
    ||||| ||||||    
T  16841738 aaatcgctaata 16841727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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