View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3308_low_46 (Length: 253)
Name: NF3308_low_46
Description: NF3308
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3308_low_46 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 13 - 253
Target Start/End: Original strand, 36240156 - 36240396
Alignment:
| Q |
13 |
aatataaatagaattacaataaaataaaaaagagaaggtaaatgtcaactattacctttcctatcctccttgcttgaatgttgtatgagaagaaaaatca |
112 |
Q |
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| T |
36240156 |
aatataaatagaattacaataaaataaaaaagagaaggtaaatgtcaactattacctttcctatcctccttgcttgaatgttgtatgagaagaaaaatca |
36240255 |
T |
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| Q |
113 |
agtctgtcttgattggtgcattctcgttagtgtctttaacataagtgcatggcagtagcaacttcaaccacatcacgccgacatgagactgcaaaacata |
212 |
Q |
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| T |
36240256 |
agtctgtcttgattggtgcattctcgttagtgtctttaacataagtgcatggcagtagcaacttcaaccacatcacgccgacatgagactgcaaaacata |
36240355 |
T |
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| Q |
213 |
aacttctcgtacataaagaggcttccacatacaatatatta |
253 |
Q |
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| T |
36240356 |
aacttctcgtatataaagaggcttccacatacaatatatta |
36240396 |
T |
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Target: chr3 (Bit Score: 79; Significance: 5e-37; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 17 - 206
Target Start/End: Original strand, 2234169 - 2234355
Alignment:
| Q |
17 |
taaatagaattacaataaaataaaaaagagaaggtaaatgtcaactattacctttcctatcctccttgcttgaatgttgtatgagaagaaaaatcaagtc |
116 |
Q |
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|||||||||||| ||||||||||||| ||||||||||||| ||||||||||||||||| |||| ||||||||||||||| |||||||||||||| | |
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| T |
2234169 |
taaatagaattagaataaaataaaaa-gagaaggtaaatgacaactattacctttcct-----ccttacttgaatgttgtatgtgaagaaaaatcaagcc |
2234262 |
T |
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| Q |
117 |
tgtcttgattggtgcattctcgttagtgtcttt---aacataagtgcatggcagtagcaacttcaaccacatcacgccgacatgagactgcaa |
206 |
Q |
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| T |
2234263 |
tatcttgattgctgcattctcttctctgtctttaacaacataagtgcatgatggtagcagcttcaaccacatcgctccgacatgagcctgcaa |
2234355 |
T |
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