View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3308_low_48 (Length: 251)
Name: NF3308_low_48
Description: NF3308
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3308_low_48 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 15 - 251
Target Start/End: Original strand, 49533872 - 49534108
Alignment:
| Q |
15 |
ggaagggaaacggagagcagtcttgaagggtaccggaatggcgtcgtaacgacggcaatcaactatttgtgtatgaatacattatctcatataccctaca |
114 |
Q |
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| T |
49533872 |
ggaagggaaacggagagcagtcttgaagggtaccggaatggcgtcgtaacgacgacaatcaactatttgtgtatgaatacattatctcatataccctaca |
49533971 |
T |
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| Q |
115 |
atcttacaaatatctgtagtcttcaatactttggccttacaaatgtatcactcgcagtaatggcatgcctaatataggccattcatttttattaattgat |
214 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
49533972 |
atcttacaaatatctgtagtcttcaatattttggccttacaaatgtatcactcgcagtaatgacatgcctaatataggccattcatttttattaattgat |
49534071 |
T |
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| Q |
215 |
gttcacctttggaccatgtcctcttagctatggacct |
251 |
Q |
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| T |
49534072 |
gttcacctttggaccatgtcctcttagctatggacct |
49534108 |
T |
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