View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3308_low_5 (Length: 609)
Name: NF3308_low_5
Description: NF3308
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3308_low_5 |
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| [»] chr1 (4 HSPs) |
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| [»] scaffold0640 (1 HSPs) |
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| [»] scaffold0271 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 547; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 547; E-Value: 0
Query Start/End: Original strand, 14 - 609
Target Start/End: Original strand, 41199413 - 41200007
Alignment:
| Q |
14 |
tgatttcctttgtaaattgatacttgttcgacctcgtctgttctttcaattcccccctattccgcttgtttattttcatttatgaatctttttaatgatt |
113 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
41199413 |
tgatttcctttgtaaattgatacttgttcgacctcgtctgttctttcaatttcccccaattccgcttgtttattttcatttatgaatctttttaatgatt |
41199512 |
T |
|
| Q |
114 |
gatttaaattattgctacaatacttttttcagatattagacttggttggaaatgatttaaaccaaactaaatatatttattggtaacaaagacactaatt |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41199513 |
gatttaaattattgctacaatacttttttcagatattagacttggttggaaatgatttaaaccaaactaaatatatttattggtaacaaagacactaatt |
41199612 |
T |
|
| Q |
214 |
atattgaaattggtttgaactaaaagtatagatgtaatatttcaataatcccacactaaaaatgtatcatgtgtnnnnnnncttgaaaacttctgccttt |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
41199613 |
atattgaaattggtttgaactaaaagtatagatgtaatatttcaataatcccacactaaaaatgtatcatgtgtaaaaaaacttgaaaacttctgccttt |
41199712 |
T |
|
| Q |
314 |
tttctatttgtttgaactaaaaatgcttgatctaaaaatataaatgtaaattatctttgcttcgcgaggtaaacacataagctcttctctcttgctactg |
413 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41199713 |
tttctatttgtttgaactaaaaatgcttgatctaaaaatataaatgtaaattatctttgcttcgcgaggtaaacacataagctcttctctcttgctactg |
41199812 |
T |
|
| Q |
414 |
tagtaatcagcaatcggtgagaaaatggctgagagactatttaagaaaagtggaagctagaaatgaactttgttttaggagtcttcacaatgtgtaagtt |
513 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
41199813 |
tagtaatcagtaatcggtgagaaaatggctgagagactatttaagaaaagtggaagctagaaatgaac-ttgttttaggagtcttcacaatgtgtaagtt |
41199911 |
T |
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| Q |
514 |
ggaacaggaggatactactaatctgtttttgaatgtcagttagatttctcatctgttttgcgtaataaatgcatatcacaccattcattctttctt |
609 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||| |
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| T |
41199912 |
ggaacaggaggatactactaatctgtttttgaatgtcagttagatttctcatatgttttgcgtaataaatgcatatcacacgattcattctttctt |
41200007 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 324 - 607
Target Start/End: Original strand, 1041411 - 1041693
Alignment:
| Q |
324 |
tttgaactaaaaatgcttgatctaaaaatataaatgtaaattatctttgcttcgcgaggtaaacacataagctcttctctcttgctactgtagtaatcag |
423 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1041411 |
tttgaactaaaaatgcttgatctaaaaatataaatgtaaattatctttgcttcgcgaggtaaacacataagctcttctctcttgctactgtagtaatcag |
1041510 |
T |
|
| Q |
424 |
caatcggtgagaaaatggctgagagactatttaagaaaagtggaagctagaaatgaactttgttttaggagtcttcacaatgtgtaagttggaacaggag |
523 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||| |
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| T |
1041511 |
taatcggtgagaaagtggctgagagactatttaagaaaagtggaagctagaaatgaac-ttgttttagcagtcttcacaatgtgtaagttggaacaggag |
1041609 |
T |
|
| Q |
524 |
gatactactaatctgtttttgaatgtcagttagatttctcatctgttttgcgtaataaatgcatatcacaccattcattctttc |
607 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||| |
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| T |
1041610 |
gatactactaatctgtttttgaatgtcagttagatttctcatcagttttgcgtaataaatgcatatcacacgattcattctttc |
1041693 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 113; E-Value: 6e-57
Query Start/End: Original strand, 483 - 607
Target Start/End: Original strand, 41192634 - 41192758
Alignment:
| Q |
483 |
ttgttttaggagtcttcacaatgtgtaagttggaacaggaggatactactaatctgtttttgaatgtcagttagatttctcatctgttttgcgtaataaa |
582 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
41192634 |
ttgttttagcagtcttcacaatgtgtaagttggaacaggaggatactactaatctgtttttgaatgtcagttagatttctcatcagttttgcgtaataaa |
41192733 |
T |
|
| Q |
583 |
tgcatatcacaccattcattctttc |
607 |
Q |
| |
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|||||||||||| |||||||||||| |
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| T |
41192734 |
tgcatatcacacgattcattctttc |
41192758 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 549 - 608
Target Start/End: Original strand, 41407385 - 41407444
Alignment:
| Q |
549 |
tcagttagatttctcatctgttttgcgtaataaatgcatatcacaccattcattctttct |
608 |
Q |
| |
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||||||||||||||||| |||||||||||| || ||||| ||||| ||||||||||||| |
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| T |
41407385 |
tcagttagatttctcattagttttgcgtaattaaagcataacacactattcattctttct |
41407444 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 392; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 144 - 607
Target Start/End: Original strand, 33322821 - 33323284
Alignment:
| Q |
144 |
agatattagacttggttggaaatgatttaaaccaaactaaatatatttattggtaacaaagacactaattatattgaaattggtttgaactaaaagtata |
243 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| || |
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| T |
33322821 |
agatattagacttggttggaaatgatttaaaccaaacaaaatatatttattggtaagaaagacactaattatattgaaattggtttgaactaaaagtcta |
33322920 |
T |
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| Q |
244 |
gatgtaatatttcaataatcccacactaaaaatgtatcatgtgtnnnnnnncttgaaaacttctgccttttttctatttgttt-gaactaaaaatgcttg |
342 |
Q |
| |
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||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
33322921 |
gatgtaatatttcaataatccgacactaaaaatgtatcatgtgtaaaaaaacttgaaaacttctgccttttttctatttgttttgaactaaaaatgcttg |
33323020 |
T |
|
| Q |
343 |
atctaaaaatataaatgtaaattatctttgcttcgcgaggtaaacacataagctcttctctcttgctactgtagtaatcagcaatcggtgagaaaatggc |
442 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||| |
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| T |
33323021 |
atctaaaaatataaatgtaaattatctttgcttcgcgaggtaaacacataagctcttctctcttgctactgtagtaatcagtaatcggtgagaaagtggc |
33323120 |
T |
|
| Q |
443 |
tgagagactatttaagaaaagtggaagctagaaatgaactttgttttaggagtcttcacaatgtgtaagttggaacaggaggatactactaatctgtttt |
542 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33323121 |
tgagagactatttaagaaaagtggaagctagaaatgaac-ttgttttagcagtcttcacaatgtgtaagttggaacaggaggatactactaatctgtttt |
33323219 |
T |
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| Q |
543 |
tgaatgtcagttagatttctcatctgttttgcgtaataaatgcatatcacaccattcattctttc |
607 |
Q |
| |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||| |
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| T |
33323220 |
tgaatgtcagttagatttctcatcagttttgcgtaataaatgcatatcacacgattcattctttc |
33323284 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 79 - 160
Target Start/End: Original strand, 33322718 - 33322799
Alignment:
| Q |
79 |
ttgtttattttcatttatgaatctttttaatgattgatttaaattattgctacaatacttttttcagatattagacttggtt |
160 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33322718 |
ttgtttattttcatttattaatctttttaatgattgatttaaattattgctacaatacttttttcagatattagacttggtt |
33322799 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 491 - 588
Target Start/End: Complemental strand, 16700496 - 16700400
Alignment:
| Q |
491 |
ggagtcttcacaatgtgtaagttggaacaggaggatactactaatctgtttttgaatgtcagttagatttctcatctgttttgcgtaataaatgcata |
588 |
Q |
| |
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|||||||| ||||||||| ||||| ||||| ||||| | ||| || |||||| |||| ||||||||| |||||||| ||||||| ||||||||||||| |
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| T |
16700496 |
ggagtctt-acaatgtgtcagttgaaacagcaggatgcgactgatatgttttcgaatatcagttagacttctcatcagttttgcataataaatgcata |
16700400 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0640 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0640
Description:
Target: scaffold0640; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 549 - 608
Target Start/End: Complemental strand, 3549 - 3490
Alignment:
| Q |
549 |
tcagttagatttctcatctgttttgcgtaataaatgcatatcacaccattcattctttct |
608 |
Q |
| |
|
|||||||||||||||||| |||||||||||| || ||||| ||||| ||||||||||||| |
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| T |
3549 |
tcagttagatttctcatcagttttgcgtaattaaagcataacacactattcattctttct |
3490 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0271 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0271
Description:
Target: scaffold0271; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 549 - 608
Target Start/End: Complemental strand, 24113 - 24054
Alignment:
| Q |
549 |
tcagttagatttctcatctgttttgcgtaataaatgcatatcacaccattcattctttct |
608 |
Q |
| |
|
|||||||||||||||||| |||||||||||| || ||||| ||||| ||||||||||||| |
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| T |
24113 |
tcagttagatttctcatcagttttgcgtaattaaagcataacacactattcattctttct |
24054 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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