View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3308_low_52 (Length: 250)
Name: NF3308_low_52
Description: NF3308
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3308_low_52 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 11 - 250
Target Start/End: Original strand, 52723515 - 52723754
Alignment:
| Q |
11 |
cagagatgtgctacttcataataatgcgagcattggtaaggctgatcaacctagtaacttgactgctaaagatgtggatagcaccattcctccggagaat |
110 |
Q |
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| T |
52723515 |
cagagatgtgctacttcataataacgcgagcattggtaaggctgatcaacctagtaacttgactgctaaagatgaggatagcaccatgcctcctgagaat |
52723614 |
T |
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| Q |
111 |
cctgtattgaaaacatccatagatcaaactagcagcagctgttccactcccctggtttctgcaatcctagggatggactctgtagcccgagtatcaatgc |
210 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52723615 |
cctgtattgaaaagatccatagatcaaactagcagcagctgttccactcccctggtttctgcaatcctagggatggactctgtagcccgagtatcaatgc |
52723714 |
T |
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| Q |
211 |
tgctgaaacgaattcgtttgctagagcctgaaaacaccat |
250 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
52723715 |
tgctgaaacgaattcgtttgctagagcctgaaaacaccat |
52723754 |
T |
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