View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3308_low_53 (Length: 250)
Name: NF3308_low_53
Description: NF3308
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3308_low_53 |
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Alignment Details
Target: chr5 (Bit Score: 113; Significance: 2e-57; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 16 - 132
Target Start/End: Original strand, 9965701 - 9965817
Alignment:
| Q |
16 |
atgggggcattttttgacttttggggcaattaacatcaagcaggtagaatcagattcatttcaaactacatttgtgttgtgttgttatatgttttgtgtc |
115 |
Q |
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| T |
9965701 |
atgggggcattttttgacttttgaggcaattaacatcaagcaggtagaatcagattcatttcaaactacatttgtgttgtgttgttatatgttttgtgtc |
9965800 |
T |
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| Q |
116 |
actctaacaacctctaa |
132 |
Q |
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| T |
9965801 |
actctaacaacctctaa |
9965817 |
T |
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Target: chr5; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 192 - 250
Target Start/End: Original strand, 9965877 - 9965935
Alignment:
| Q |
192 |
aatcaaaacacgtgaaagagttcagtgaaggaataaatggagctaacagtaacgtgatt |
250 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9965877 |
aatcaaaacacgtgaaagagttcagtgaaggaataaatggagctaacagtaacgtgatt |
9965935 |
T |
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