View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3308_low_55 (Length: 249)

Name: NF3308_low_55
Description: NF3308
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3308_low_55
NF3308_low_55
[»] chr6 (5 HSPs)
chr6 (1-131)||(33630940-33631071)
chr6 (158-241)||(29873623-29873706)
chr6 (158-240)||(4792842-4792924)
chr6 (158-241)||(2017925-2018008)
chr6 (173-241)||(22516897-22516965)
[»] chr7 (3 HSPs)
chr7 (158-241)||(30504214-30504297)
chr7 (158-241)||(24279020-24279103)
chr7 (158-241)||(42437424-42437507)
[»] chr3 (9 HSPs)
chr3 (158-241)||(55094042-55094125)
chr3 (157-241)||(5635908-5635992)
chr3 (158-241)||(2182196-2182279)
chr3 (158-241)||(51225501-51225584)
chr3 (161-241)||(32771506-32771586)
chr3 (158-241)||(17257143-17257226)
chr3 (158-222)||(50380643-50380707)
chr3 (158-241)||(35494595-35494678)
chr3 (158-220)||(36316755-36316817)
[»] chr2 (7 HSPs)
chr2 (158-241)||(11364404-11364487)
chr2 (158-234)||(23048845-23048921)
chr2 (158-241)||(8667029-8667112)
chr2 (163-241)||(43890687-43890765)
chr2 (158-240)||(44077948-44078030)
chr2 (176-241)||(21632369-21632434)
chr2 (198-241)||(28720266-28720309)
[»] chr1 (7 HSPs)
chr1 (158-241)||(4475657-4475740)
chr1 (158-241)||(50503984-50504067)
chr1 (161-241)||(50877288-50877368)
chr1 (161-240)||(21259457-21259536)
chr1 (158-241)||(49695938-49696021)
chr1 (158-241)||(51548931-51549014)
chr1 (158-191)||(39277540-39277573)
[»] scaffold0854 (1 HSPs)
scaffold0854 (158-241)||(2792-2875)
[»] chr4 (8 HSPs)
chr4 (158-232)||(51543489-51543563)
chr4 (163-241)||(53060935-53061013)
chr4 (158-241)||(6033332-6033415)
chr4 (158-241)||(8143833-8143916)
chr4 (158-241)||(33167521-33167604)
chr4 (161-241)||(29775872-29775952)
chr4 (158-241)||(38829068-38829153)
chr4 (173-235)||(1139660-1139722)
[»] chr8 (5 HSPs)
chr8 (158-241)||(8348506-8348589)
chr8 (158-241)||(45309073-45309156)
chr8 (158-241)||(12279744-12279827)
chr8 (163-240)||(42074711-42074788)
chr8 (158-241)||(8951897-8951983)
[»] chr5 (4 HSPs)
chr5 (162-241)||(4887968-4888047)
chr5 (158-241)||(38163129-38163212)
chr5 (158-241)||(38973971-38974054)
chr5 (163-241)||(26365486-26365564)
[»] scaffold0016 (1 HSPs)
scaffold0016 (174-241)||(200900-200967)


Alignment Details
Target: chr6 (Bit Score: 116; Significance: 4e-59; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 1 - 131
Target Start/End: Complemental strand, 33631071 - 33630940
Alignment:
Q  1 tctataggttatgcctgagttatacttatggttgacagtataatatagtgtatattttaaaattgtgtacttattatttgggtgtaaaacaagtggtctc 100  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  33631071 tctataggttatgcctgagttatacttatggttgacagtatattatagtgtatattttaaaattgtgtacttattatttgggagtaaaacaagtggtctc 33630972  T
Q  101 tatgttcatttgtag-agactaatctctttga 131  Q
    ||||||||||||||| ||||||||||||||||    
T  33630971 tatgttcatttgtagcagactaatctctttga 33630940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 158 - 241
Target Start/End: Original strand, 29873623 - 29873706
Alignment:
Q  158 aacagagttgatgaagaaatataaatagaaactacgattatacttttaacaatgtaaacagtatgtgattgttctgatattttt 241  Q
    |||| ||||||||| |||||||||||||||||||  ||||||||||||| |||||||||||||||||||||||||||| |||||    
T  29873623 aacaaagttgatgaggaaatataaatagaaactatcattatacttttaataatgtaaacagtatgtgattgttctgattttttt 29873706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 158 - 240
Target Start/End: Original strand, 4792842 - 4792924
Alignment:
Q  158 aacagagttgatgaagaaatataaatagaaactacgattatacttttaacaatgtaaacagtatgtgattgttctgatatttt 240  Q
    |||||||||||||| |||||||||||||||||||  ||||||||||||| |||||||||| ||||||||||||||||| ||||    
T  4792842 aacagagttgatgaggaaatataaatagaaactatcattatacttttaataatgtaaacaatatgtgattgttctgatttttt 4792924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 158 - 241
Target Start/End: Complemental strand, 2018008 - 2017925
Alignment:
Q  158 aacagagttgatgaagaaatataaatagaaactacgattatacttttaacaatgtaaacagtatgtgattgttctgatattttt 241  Q
    |||| ||||||||| |||||||||||||||||||  ||||||||||||| |||||| ||||||||||||||||||||| |||||    
T  2018008 aacaaagttgatgaggaaatataaatagaaactatcattatacttttaataatgtagacagtatgtgattgttctgattttttt 2017925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 173 - 241
Target Start/End: Complemental strand, 22516965 - 22516897
Alignment:
Q  173 gaaatataaatagaaactacgattatacttttaacaatgtaaacagtatgtgattgttctgatattttt 241  Q
    |||||||||||||||| ||  ||||||||||||| |||||||||| ||||||||||||||||| |||||    
T  22516965 gaaatataaatagaaaatatcattatacttttaataatgtaaacaatatgtgattgttctgattttttt 22516897  T

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Target: chr7 (Bit Score: 64; Significance: 4e-28; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 158 - 241
Target Start/End: Original strand, 30504214 - 30504297
Alignment:
Q  158 aacagagttgatgaagaaatataaatagaaactacgattatacttttaacaatgtaaacagtatgtgattgttctgatattttt 241  Q
    |||||||||||||| |||||||||||||||||||  ||||||||||||| |||||||||||||||||||||||||||| |||||    
T  30504214 aacagagttgatgaggaaatataaatagaaactatcattatacttttaataatgtaaacagtatgtgattgttctgattttttt 30504297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 158 - 241
Target Start/End: Complemental strand, 24279103 - 24279020
Alignment:
Q  158 aacagagttgatgaagaaatataaatagaaactacgattatacttttaacaatgtaaacagtatgtgattgttctgatattttt 241  Q
    |||||||||||||| |||||||||||| ||||||  ||||||||||||| |||||||||||||||||||||||||||| |||||    
T  24279103 aacagagttgatgaggaaatataaatataaactatcattatacttttaataatgtaaacagtatgtgattgttctgattttttt 24279020  T

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Target: chr7; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 158 - 241
Target Start/End: Complemental strand, 42437507 - 42437424
Alignment:
Q  158 aacagagttgatgaagaaatataaatagaaactacgattatacttttaacaatgtaaacagtatgtgattgttctgatattttt 241  Q
    |||| ||||||||| |||||||||||||||||||  ||||||||||||| |||||||||||||||| ||||||||||| |||||    
T  42437507 aacatagttgatgaggaaatataaatagaaactatcattatacttttaataatgtaaacagtatgtcattgttctgattttttt 42437424  T

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Target: chr3 (Bit Score: 64; Significance: 4e-28; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 158 - 241
Target Start/End: Complemental strand, 55094125 - 55094042
Alignment:
Q  158 aacagagttgatgaagaaatataaatagaaactacgattatacttttaacaatgtaaacagtatgtgattgttctgatattttt 241  Q
    |||||||||||||| |||||||||||||||||||  ||||||||||||| |||||||||||||||||||||||||||| |||||    
T  55094125 aacagagttgatgaggaaatataaatagaaactatcattatacttttaataatgtaaacagtatgtgattgttctgattttttt 55094042  T

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Target: chr3; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 157 - 241
Target Start/End: Original strand, 5635908 - 5635992
Alignment:
Q  157 aaacagagttgatgaagaaatataaatagaaactacgattatacttttaacaatgtaaacagtatgtgattgttctgatattttt 241  Q
    ||||||||||||||| | |||||||||||||||||| ||||||||||||| |||||||||| ||||||||||||||||| |||||    
T  5635908 aaacagagttgatgatggaatataaatagaaactaccattatacttttaataatgtaaacaatatgtgattgttctgattttttt 5635992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 158 - 241
Target Start/End: Complemental strand, 2182279 - 2182196
Alignment:
Q  158 aacagagttgatgaagaaatataaatagaaactacgattatacttttaacaatgtaaacagtatgtgattgttctgatattttt 241  Q
    |||||||||||||| ||||||||||| |||||||  ||||||||||||| |||||||||||||||||||||||||||| |||||    
T  2182279 aacagagttgatgaggaaatataaattgaaactatcattatacttttaataatgtaaacagtatgtgattgttctgattttttt 2182196  T

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Target: chr3; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 158 - 241
Target Start/End: Original strand, 51225501 - 51225584
Alignment:
Q  158 aacagagttgatgaagaaatataaatagaaactacgattatacttttaacaatgtaaacagtatgtgattgttctgatattttt 241  Q
    |||||||||||||| |||||||||||||||||||  ||||||||||||| |||||||| ||||||||||||||||||| |||||    
T  51225501 aacagagttgatgaggaaatataaatagaaactatcattatacttttaataatgtaaatagtatgtgattgttctgattttttt 51225584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 161 - 241
Target Start/End: Complemental strand, 32771586 - 32771506
Alignment:
Q  161 agagttgatgaagaaatataaatagaaactacgattatacttttaacaatgtaaacagtatgtgattgttctgatattttt 241  Q
    ||||||||||| |||||||||||||||||||  ||||||||||||| |||||||||| ||||||||||||||||| |||||    
T  32771586 agagttgatgaggaaatataaatagaaactatcattatacttttaataatgtaaacaatatgtgattgttctgattttttt 32771506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 158 - 241
Target Start/End: Original strand, 17257143 - 17257226
Alignment:
Q  158 aacagagttgatgaagaaatataaatagaaactacgattatacttttaacaatgtaaacagtatgtgattgttctgatattttt 241  Q
    |||||||||||||| |||||||||||||||||||  ||||||||||||| |||||||||| ||| ||||||||||||| |||||    
T  17257143 aacagagttgatgaggaaatataaatagaaactatcattatacttttaataatgtaaacattatttgattgttctgattttttt 17257226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 158 - 222
Target Start/End: Original strand, 50380643 - 50380707
Alignment:
Q  158 aacagagttgatgaagaaatataaatagaaactacgattatacttttaacaatgtaaacagtatg 222  Q
    |||||||||||||| |||||||||||||||||||  ||||||||||||| |||||||||||||||    
T  50380643 aacagagttgatgaggaaatataaatagaaactatcattatacttttaataatgtaaacagtatg 50380707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 158 - 241
Target Start/End: Complemental strand, 35494678 - 35494595
Alignment:
Q  158 aacagagttgatgaagaaatataaatagaaactacgattatacttttaacaatgtaaacagtatgtgattgttctgatattttt 241  Q
    ||||||| |||||| ||||||||||| |||||||  ||||||||||||| |||||||| |||||||||||||||| || |||||    
T  35494678 aacagagatgatgaggaaatataaattgaaactatcattatacttttaataatgtaaatagtatgtgattgttcttattttttt 35494595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 158 - 220
Target Start/End: Complemental strand, 36316817 - 36316755
Alignment:
Q  158 aacagagttgatgaagaaatataaatagaaactacgattatacttttaacaatgtaaacagta 220  Q
    |||||||||||||| |||||||||||| ||| ||  ||||||||||||| |||||||||||||    
T  36316817 aacagagttgatgaggaaatataaatataaagtatcattatacttttaataatgtaaacagta 36316755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 64; Significance: 4e-28; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 158 - 241
Target Start/End: Original strand, 11364404 - 11364487
Alignment:
Q  158 aacagagttgatgaagaaatataaatagaaactacgattatacttttaacaatgtaaacagtatgtgattgttctgatattttt 241  Q
    |||||||||||||| |||||||||||||||||||  ||||||||||||| |||||||||||||||||||||||||||| |||||    
T  11364404 aacagagttgatgaggaaatataaatagaaactatcattatacttttaataatgtaaacagtatgtgattgttctgattttttt 11364487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 158 - 234
Target Start/End: Original strand, 23048845 - 23048921
Alignment:
Q  158 aacagagttgatgaagaaatataaatagaaactacgattatacttttaacaatgtaaacagtatgtgattgttctga 234  Q
    |||||||||||||| |||||||||||||||||||  ||||||||||||| |||||||||||||||||||||||||||    
T  23048845 aacagagttgatgaggaaatataaatagaaactatcattatacttttaataatgtaaacagtatgtgattgttctga 23048921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 158 - 241
Target Start/End: Complemental strand, 8667112 - 8667029
Alignment:
Q  158 aacagagttgatgaagaaatataaatagaaactacgattatacttttaacaatgtaaacagtatgtgattgttctgatattttt 241  Q
    |||||||||||||| ||||||||||| |||||||  ||||||||||||| ||||||||||||||||||||||| |||| |||||    
T  8667112 aacagagttgatgaggaaatataaattgaaactatcattatacttttaataatgtaaacagtatgtgattgttatgattttttt 8667029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 163 - 241
Target Start/End: Original strand, 43890687 - 43890765
Alignment:
Q  163 agttgatgaagaaatataaatagaaactacgattatacttttaacaatgtaaacagtatgtgattgttctgatattttt 241  Q
    ||||||||| |||||||||||||||||||  ||||||||||||| |||||||| ||||||||||||||||||| |||||    
T  43890687 agttgatgaggaaatataaatagaaactatcattatacttttaataatgtaaatagtatgtgattgttctgattttttt 43890765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 158 - 240
Target Start/End: Complemental strand, 44078030 - 44077948
Alignment:
Q  158 aacagagttgatgaagaaatataaatagaaactacgattatacttttaacaatgtaaacagtatgtgattgttctgatatttt 240  Q
    |||| |||||||||  ||||||||||||||||||  ||||||||||| | |||||||||| ||||||||||||||||| ||||    
T  44078030 aacatagttgatgagaaaatataaatagaaactatcattatacttttgataatgtaaacaatatgtgattgttctgatttttt 44077948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 176 - 241
Target Start/End: Original strand, 21632369 - 21632434
Alignment:
Q  176 atataaatagaaactacgattatacttttaacaatgtaaacagtatgtgattgttctgatattttt 241  Q
    ||||||||||||| ||  ||||||||||||| ||||||||||||||||||||||| |||| |||||    
T  21632369 atataaatagaaaatatcattatacttttaataatgtaaacagtatgtgattgttttgattttttt 21632434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 198 - 241
Target Start/End: Complemental strand, 28720309 - 28720266
Alignment:
Q  198 tacttttaacaatgtaaacagtatgtgattgttctgatattttt 241  Q
    ||||||||| |||||||| ||||||||||||||||||| |||||    
T  28720309 tacttttaataatgtaaaaagtatgtgattgttctgattttttt 28720266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 64; Significance: 4e-28; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 158 - 241
Target Start/End: Complemental strand, 4475740 - 4475657
Alignment:
Q  158 aacagagttgatgaagaaatataaatagaaactacgattatacttttaacaatgtaaacagtatgtgattgttctgatattttt 241  Q
    |||||||||||||| |||||||||||||||||||  ||||||||||||| |||||||||| |||||||||||||||||||||||    
T  4475740 aacagagttgatgaggaaatataaatagaaactatcattatacttttaataatgtaaacaatatgtgattgttctgatattttt 4475657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 158 - 241
Target Start/End: Original strand, 50503984 - 50504067
Alignment:
Q  158 aacagagttgatgaagaaatataaatagaaactacgattatacttttaacaatgtaaacagtatgtgattgttctgatattttt 241  Q
    ||||||||||||||  ||||||||||||||||||  ||||||||||||| |||||||||||||||||||||||||||| |||||    
T  50503984 aacagagttgatgagaaaatataaatagaaactatcattatacttttaataatgtaaacagtatgtgattgttctgattttttt 50504067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 161 - 241
Target Start/End: Complemental strand, 50877368 - 50877288
Alignment:
Q  161 agagttgatgaagaaatataaatagaaactacgattatacttttaacaatgtaaacagtatgtgattgttctgatattttt 241  Q
    ||||||||||| |||||||||||||||||||  |||||||||||||  ||||||||||||||||||||||||||| |||||    
T  50877368 agagttgatgaggaaatataaatagaaactatcattatacttttaatgatgtaaacagtatgtgattgttctgattttttt 50877288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 161 - 240
Target Start/End: Complemental strand, 21259536 - 21259457
Alignment:
Q  161 agagttgatgaagaaatataaatagaaactacgattatacttttaacaatgtaaacagtatgtgattgttctgatatttt 240  Q
    ||||||||||| |||||||||| ||||||||  ||||||||||||| |||||||||||||||||||||||||||| ||||    
T  21259536 agagttgatgaggaaatataaaaagaaactatcattatacttttaataatgtaaacagtatgtgattgttctgatttttt 21259457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 158 - 241
Target Start/End: Original strand, 49695938 - 49696021
Alignment:
Q  158 aacagagttgatgaagaaatataaatagaaactacgattatacttttaacaatgtaaacagtatgtgattgttctgatattttt 241  Q
    ||||||||||||||  |||||||||||||||||   ||||||||||||| |||||||||||||||||||||||||||| |||||    
T  49695938 aacagagttgatgagaaaatataaatagaaactgtcattatacttttaataatgtaaacagtatgtgattgttctgattttttt 49696021  T

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Target: chr1; HSP #6
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 158 - 241
Target Start/End: Original strand, 51548931 - 51549014
Alignment:
Q  158 aacagagttgatgaagaaatataaatagaaactacgattatacttttaacaatgtaaacagtatgtgattgttctgatattttt 241  Q
    |||| ||||||||| |||||||||||||||||||  ||||||||||||| |||||||||| |||| |||||||||||| |||||    
T  51548931 aacaaagttgatgaggaaatataaatagaaactatcattatacttttaataatgtaaacaatatgcgattgttctgattttttt 51549014  T

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Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 158 - 191
Target Start/End: Original strand, 39277540 - 39277573
Alignment:
Q  158 aacagagttgatgaagaaatataaatagaaacta 191  Q
    |||||||||||||| |||||||||||||||||||    
T  39277540 aacagagttgatgaggaaatataaatagaaacta 39277573  T

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Target: scaffold0854 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: scaffold0854
Description:

Target: scaffold0854; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 158 - 241
Target Start/End: Complemental strand, 2875 - 2792
Alignment:
Q  158 aacagagttgatgaagaaatataaatagaaactacgattatacttttaacaatgtaaacagtatgtgattgttctgatattttt 241  Q
    |||||||||||||| |||||||||||||||||||  ||||||||||||| |||||||||| ||||||||||||||||| |||||    
T  2875 aacagagttgatgaggaaatataaatagaaactatcattatacttttaataatgtaaacaatatgtgattgttctgattttttt 2792  T

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Target: chr4 (Bit Score: 59; Significance: 4e-25; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 158 - 232
Target Start/End: Original strand, 51543489 - 51543563
Alignment:
Q  158 aacagagttgatgaagaaatataaatagaaactacgattatacttttaacaatgtaaacagtatgtgattgttct 232  Q
    |||||||||||||| |||||||||||||||||||  ||||||||||||| |||||||||||||||||||||||||    
T  51543489 aacagagttgatgaggaaatataaatagaaactatcattatacttttaataatgtaaacagtatgtgattgttct 51543563  T

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Target: chr4; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 163 - 241
Target Start/End: Original strand, 53060935 - 53061013
Alignment:
Q  163 agttgatgaagaaatataaatagaaactacgattatacttttaacaatgtaaacagtatgtgattgttctgatattttt 241  Q
    ||||||||| |||||||||||||||||||  ||||||||||||| |||||||||||||||||||||||||||| |||||    
T  53060935 agttgatgaggaaatataaatagaaactatcattatacttttaataatgtaaacagtatgtgattgttctgattttttt 53061013  T

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Target: chr4; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 158 - 241
Target Start/End: Complemental strand, 6033415 - 6033332
Alignment:
Q  158 aacagagttgatgaagaaatataaatagaaactacgattatacttttaacaatgtaaacagtatgtgattgttctgatattttt 241  Q
    |||| ||||||||| |||||||||||||||||||  ||||||||||||| |||||||| ||||||||||||||||||| |||||    
T  6033415 aacaaagttgatgaggaaatataaatagaaactatcattatacttttaataatgtaaatagtatgtgattgttctgattttttt 6033332  T

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Target: chr4; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 158 - 241
Target Start/End: Complemental strand, 8143916 - 8143833
Alignment:
Q  158 aacagagttgatgaagaaatataaatagaaactacgattatacttttaacaatgtaaacagtatgtgattgttctgatattttt 241  Q
    |||||||||||| | |||||||||||||||||||  ||||||||||||| |||||||||| ||||||||||||||||| |||||    
T  8143916 aacagagttgatcaggaaatataaatagaaactatcattatacttttaataatgtaaacattatgtgattgttctgattttttt 8143833  T

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Target: chr4; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 158 - 241
Target Start/End: Complemental strand, 33167604 - 33167521
Alignment:
Q  158 aacagagttgatgaagaaatataaatagaaactacgattatacttttaacaatgtaaacagtatgtgattgttctgatattttt 241  Q
    |||| ||||||||| |||||||||||||||||||  ||||||||||||| |||||||| ||||||||||||||||||| |||||    
T  33167604 aacacagttgatgaggaaatataaatagaaactattattatacttttaataatgtaaatagtatgtgattgttctgattttttt 33167521  T

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Target: chr4; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 161 - 241
Target Start/End: Original strand, 29775872 - 29775952
Alignment:
Q  161 agagttgatgaagaaatataaatagaaactacgattatacttttaacaatgtaaacagtatgtgattgttctgatattttt 241  Q
    ||||||||||| |||||||||||| ||||||  ||||||||||||| |||| ||||||||||||||||||||||| |||||    
T  29775872 agagttgatgaggaaatataaatataaactatcattatacttttaataatgcaaacagtatgtgattgttctgattttttt 29775952  T

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Target: chr4; HSP #7
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 158 - 241
Target Start/End: Original strand, 38829068 - 38829153
Alignment:
Q  158 aacagagttgatgaagaaatataaatagaaactacgattatacttttaacaatgtaaaca--gtatgtgattgttctgatattttt 241  Q
    |||| ||||||||| |||||||||||||||||||  ||||||||||||| ||||||||||   ||||||||||||||||| |||||    
T  38829068 aacaaagttgatgaggaaatataaatagaaactatcattatacttttaataatgtaaacaatatatgtgattgttctgattttttt 38829153  T

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Target: chr4; HSP #8
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 173 - 235
Target Start/End: Original strand, 1139660 - 1139722
Alignment:
Q  173 gaaatataaatagaaactacgattatacttttaacaatgtaaacagtatgtgattgttctgat 235  Q
    |||||||||||||||||||  ||||||||||||| |||||||||| |||||||||| ||||||    
T  1139660 gaaatataaatagaaactatcattatacttttaataatgtaaacattatgtgattggtctgat 1139722  T

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Target: chr8 (Bit Score: 56; Significance: 3e-23; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 158 - 241
Target Start/End: Complemental strand, 8348589 - 8348506
Alignment:
Q  158 aacagagttgatgaagaaatataaatagaaactacgattatacttttaacaatgtaaacagtatgtgattgttctgatattttt 241  Q
    |||||| ||||||| |||||||||||||||||||  |||||||||||||  ||||||||||||||||||||||||||| |||||    
T  8348589 aacagaattgatgaggaaatataaatagaaactatcattatacttttaattatgtaaacagtatgtgattgttctgattttttt 8348506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 158 - 241
Target Start/End: Complemental strand, 45309156 - 45309073
Alignment:
Q  158 aacagagttgatgaagaaatataaatagaaactacgattatacttttaacaatgtaaacagtatgtgattgttctgatattttt 241  Q
    |||| ||||||||| |||||||||||||||||||  ||||| ||||||| |||||||||||||||||||||||||||| |||||    
T  45309156 aacatagttgatgaggaaatataaatagaaactatcattatgcttttaataatgtaaacagtatgtgattgttctgattttttt 45309073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 158 - 241
Target Start/End: Complemental strand, 12279827 - 12279744
Alignment:
Q  158 aacagagttgatgaagaaatataaatagaaactacgattatacttttaacaatgtaaacagtatgtgattgttctgatattttt 241  Q
    |||| ||||||||| ||||| |||||||||||||  ||||||||||||| |||||||| ||||||||||||||||||| |||||    
T  12279827 aacaaagttgatgaggaaatgtaaatagaaactatcattatacttttaataatgtaaatagtatgtgattgttctgattttttt 12279744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 163 - 240
Target Start/End: Complemental strand, 42074788 - 42074711
Alignment:
Q  163 agttgatgaagaaatataaatagaaactacgattatacttttaacaatgtaaacagtatgtgattgttctgatatttt 240  Q
    ||||||||| |||||||||||||||||||  ||||||||||||| ||||||||||||||  |||||||||||| ||||    
T  42074788 agttgatgaggaaatataaatagaaactatcattatacttttaataatgtaaacagtatacgattgttctgatttttt 42074711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 158 - 241
Target Start/End: Original strand, 8951897 - 8951983
Alignment:
Q  158 aacagagttgatgaagaaatataaatagaaact---acgattatacttttaacaatgtaaacagtatgtgattgttctgatattttt 241  Q
    |||| ||||||||| ||||||||||||||||||   |  ||||||||||||| |||||||||||||||||||||||||||| |||||    
T  8951897 aacatagttgatgaggaaatataaatagaaactatcataattatacttttaataatgtaaacagtatgtgattgttctgattttttt 8951983  T

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Target: chr5 (Bit Score: 56; Significance: 3e-23; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 162 - 241
Target Start/End: Original strand, 4887968 - 4888047
Alignment:
Q  162 gagttgatgaagaaatataaatagaaactacgattatacttttaacaatgtaaacagtatgtgattgttctgatattttt 241  Q
    ||||||| || |||||||||||||||||||  ||||||||||||| |||||||||||||||||||||||||||| |||||    
T  4887968 gagttgacgaggaaatataaatagaaactatcattatacttttaataatgtaaacagtatgtgattgttctgattttttt 4888047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 158 - 241
Target Start/End: Complemental strand, 38163212 - 38163129
Alignment:
Q  158 aacagagttgatgaagaaatataaatagaaactacgattatacttttaacaatgtaaacagtatgtgattgttctgatattttt 241  Q
    |||||||||||||| ||||||||||||||||||   ||||||||||||| |||||||||| ||||||||||||||||| |||||    
T  38163212 aacagagttgatgaggaaatataaatagaaactgtcattatacttttaataatgtaaacaatatgtgattgttctgattttttt 38163129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 158 - 241
Target Start/End: Original strand, 38973971 - 38974054
Alignment:
Q  158 aacagagttgatgaagaaatataaatagaaactacgattatacttttaacaatgtaaacagtatgtgattgttctgatattttt 241  Q
    |||| ||||||||| |||||||||||||||||||   |||||||||||| |||||||||||||||||||||||||||| |||||    
T  38973971 aacaaagttgatgaggaaatataaatagaaactatccttatacttttaataatgtaaacagtatgtgattgttctgattttttt 38974054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 163 - 241
Target Start/End: Complemental strand, 26365564 - 26365486
Alignment:
Q  163 agttgatgaagaaatataaatagaaactacgattatacttttaacaatgtaaacagtatgtgattgttctgatattttt 241  Q
    ||||||||| |||||||||||||||||||  ||||||||||||| |||| ||||||||||||||||||||||| |||||    
T  26365564 agttgatgaggaaatataaatagaaactatcattatacttttaataatgaaaacagtatgtgattgttctgattttttt 26365486  T

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Target: scaffold0016 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 174 - 241
Target Start/End: Complemental strand, 200967 - 200900
Alignment:
Q  174 aaatataaatagaaactacgattatacttttaacaatgtaaacagtatgtgattgttctgatattttt 241  Q
    ||||| ||||||||||||  | ||||||||||| |||||||| |||||||||||||||||||||||||    
T  200967 aaatagaaatagaaactatcactatacttttaataatgtaaatagtatgtgattgttctgatattttt 200900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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