View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3308_low_56 (Length: 247)
Name: NF3308_low_56
Description: NF3308
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3308_low_56 |
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Alignment Details
Target: chr6 (Bit Score: 205; Significance: 1e-112; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 231
Target Start/End: Original strand, 7768642 - 7768871
Alignment:
| Q |
1 |
ctttaatcaacacgggacttgatttttccaatatatcaaactgttacatttaactaatatgcatgttctttttaatatgatattagtattactttgtagg |
100 |
Q |
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| T |
7768642 |
ctttaatcaacacgggacttgatttttccaatatatcaaactgttacatttaactaatatgcatgttctttttaatatgatattagtattactttgtagg |
7768741 |
T |
|
| Q |
101 |
tacatcctctgagaccgtcgaggcatccatcttacaa-ttcaattttaagaactaaaatgtgtctgacaatttgtctttgtctaaccattttgattatat |
199 |
Q |
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| T |
7768742 |
tacatcctctgagaccgtcgaggcatccatcttacaatttcaattttaagaactaaaatgtgtctgac--tttgtctttgtctaaccattttgattctat |
7768839 |
T |
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| Q |
200 |
gtctaattccttacatcattgatgaaatatgt |
231 |
Q |
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| T |
7768840 |
gtctaattccttacatcattgatgaagtatgt |
7768871 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 182 - 227
Target Start/End: Original strand, 7774687 - 7774732
Alignment:
| Q |
182 |
taaccattttgattatatgtctaattccttacatcattgatgaaat |
227 |
Q |
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| T |
7774687 |
taaccattttgattctatgtctaattctttgcatcattgatgaaat |
7774732 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 170 - 227
Target Start/End: Original strand, 7779518 - 7779575
Alignment:
| Q |
170 |
tttgtctttgtctaaccattttgattatatgtctaattccttacatcattgatgaaat |
227 |
Q |
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| T |
7779518 |
tttgtctttgcttaaccattttgattatgtttctaattctttgcatcatttatgaaat |
7779575 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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