View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3308_low_57 (Length: 247)
Name: NF3308_low_57
Description: NF3308
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3308_low_57 |
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Alignment Details
Target: chr5 (Bit Score: 89; Significance: 5e-43; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 15 - 208
Target Start/End: Original strand, 38053756 - 38053945
Alignment:
| Q |
15 |
ttattattgtgagacaaattatattannnnnnn-gacaaaagtgagacacatttttatgacattatttttaggtgacgaatataggagtaattaattggg |
113 |
Q |
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| T |
38053756 |
ttattattgtgagacaaattattttattttttttgacaaaagtgagacacatttttatgacattatttttaggtgacgaatataggag----taattggg |
38053851 |
T |
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| Q |
114 |
aatgtattcttttacatgaaattctnnnnnnnnnnnnnnnnntatgtgcaacaatctccaccgtaaatctcaatctctcattttctttatatttt |
208 |
Q |
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| T |
38053852 |
aatgtattcttttacatgaaattct-aaaaaaaaaaaaaatatatgtgcaacaatctccaccgtaaatctcaatctctcattttctttatatttt |
38053945 |
T |
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