View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3308_low_58 (Length: 246)
Name: NF3308_low_58
Description: NF3308
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3308_low_58 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 208; Significance: 1e-114; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 19 - 245
Target Start/End: Complemental strand, 38444752 - 38444525
Alignment:
| Q |
19 |
acacgctctacaagctagccacgtcaccctatttttaagacatgatacttgcaaccggctcttttggttaagaaacaagaaacccatttgcaaaacatta |
118 |
Q |
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| T |
38444752 |
acacgctctacaagctagccacgtcatcctatttttaagacatgatacttgcaaccggctcttttggttaagaaacaagaaacccatttgcaaaacatta |
38444653 |
T |
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| Q |
119 |
ttttcctgtcaatctttccaactcttaaa-tacaaacctccactcacgagtttgaagctattcaccgatcgttcaacagccaccatttttcccacaaacc |
217 |
Q |
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||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
38444652 |
ttttcctgtcaatctttccaacttttaaagtacaaacctccactcacgagtttgaagctattcaccgatcgttcaacagccaccattttttccacaaacc |
38444553 |
T |
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| Q |
218 |
tcacacttttcccttggcatggtagatt |
245 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
38444552 |
tcacacttttcccttggcatggtagatt |
38444525 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 19 - 209
Target Start/End: Complemental strand, 4242454 - 4242263
Alignment:
| Q |
19 |
acacgctctacaagctagccacgtcaccctatttttaagacatgatacttgcaaccggctcttttggttaagaaacaagaaacccatttgcaaaacatta |
118 |
Q |
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|||||| | ||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||| | ||||||| ||||| |
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| T |
4242454 |
acacgccccacaagctagccacatcaccctatttttaagacttgatacttgcaaccggctcttttggttaagaaacatgaaatcgatttgcataacatat |
4242355 |
T |
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| Q |
119 |
ttttcctgtcaatctttccaactcttaaa-tacaaacctccactcacgagtttgaagctattcaccgatcgttcaacagccaccatttttcc |
209 |
Q |
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| T |
4242354 |
tttttggatcaatctttctctctcttaaactacaaacttcctttcacgagtttgaagctattcacctatcgttccacaaccaccatttttcc |
4242263 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 19 - 206
Target Start/End: Complemental strand, 4234553 - 4234365
Alignment:
| Q |
19 |
acacgctctacaagctagccacgtcaccctatttttaagacatgatacttgcaaccggctcttttggttaagaaacaagaaacccatttgcaaaacatta |
118 |
Q |
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|||||| | ||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||| | ||||||| ||||| |
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| T |
4234553 |
acacgccccacaagctagccacatcaccctatttttaagacttgatacttgcaaccggctcttttggttaagaaacatgaaatcgatttgcataacatac |
4234454 |
T |
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| Q |
119 |
ttttcctgtcaatctttccaactcttaaa-tacaaacctccactcacgagtttgaagctattcaccgatcgttcaacagccaccatttt |
206 |
Q |
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| T |
4234453 |
ttttctgatcaatctttctctctcttaaactacaaacttccagtcatgagtttgaagttattcacctatcgttccacaaccaccatttt |
4234365 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 23 - 246
Target Start/End: Original strand, 2658209 - 2658432
Alignment:
| Q |
23 |
gctctacaagctagccacgtcaccctatttttaagacatgatacttgcaaccggctcttttggttaagaaacaagaaacccatttgcaaaacattatttt |
122 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2658209 |
gctctacaagctagctacgtcaccctatttttaagacatgatacttgcaaccggctcttttggttaagaaacaagaaacccatttgcaaaacattatttt |
2658308 |
T |
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| Q |
123 |
cctgtcaatctttccaactcttaaatacaaacctccactcacgagtttgaagctattcaccgatcgttcaacagccaccatttttcccacaaacctcaca |
222 |
Q |
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||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
2658309 |
cctgtcaatctttccaactcttaaatataaacctccacttgcgagtttgaagctattcaccgatcgttcaacatccaccatttttcccacaaacctcaca |
2658408 |
T |
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| Q |
223 |
cttttcccttggcatggtagattt |
246 |
Q |
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|||||||||||||||||||||||| |
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| T |
2658409 |
cttttcccttggcatggtagattt |
2658432 |
T |
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