View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3308_low_6 (Length: 581)
Name: NF3308_low_6
Description: NF3308
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3308_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 254; Significance: 1e-141; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 11 - 297
Target Start/End: Original strand, 36992109 - 36992395
Alignment:
| Q |
11 |
cagagattgcataggtgtaacacgatgttcgagtgatagagaagaaaaattgaaagttaaagaagcagtagtgtggtctcctgctgaggaattggcaaag |
110 |
Q |
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| T |
36992109 |
cagaaattgcataggtgtaacacgatgttcgagtgatagagaagaaaaattgaaagttaaagaagcagtagtgtggtctcctgctgaggaattggccaag |
36992208 |
T |
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| Q |
111 |
aaatttgagcggcggcttcttgtgggaataggttcagcttcacttgtagctttaggtgcaaattttggtggcatcactagnnnnnnncttggtttgtcac |
210 |
Q |
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| T |
36992209 |
aaatttgagcggcggcttcttgtgggaataggttcagcttcacttgtagctttaggtgcaaattttggtggcatcactagtttttttcttggtttgtcac |
36992308 |
T |
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| Q |
211 |
cacagaatggtcgtaaactgaagctagatgtgctttatcccataggaggctacacacgttacattgacacaagagaggggttcggta |
297 |
Q |
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| T |
36992309 |
cacagaatggtcgtaaactgaagctggatgtgctttatcccataggaggctacacacgttacattgacacaagagaggggttcggta |
36992395 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 349 - 565
Target Start/End: Original strand, 36992443 - 36992659
Alignment:
| Q |
349 |
aaaagcatgctagtacatacatttaattaattgttaattttggatgatttggatggtatattaaaataatcagaatttatatacccggtgaattgggttg |
448 |
Q |
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| T |
36992443 |
aaaagcatgctagtacatacatttaattaattgttaatttgggatgatttggatggcatattaaaataatcagaatttatatacccggtgaattgggttg |
36992542 |
T |
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| Q |
449 |
gagatcagacactcctgtatcgagctgctaaaagaagagaaatggaactatcattggatcctcctccgctgaatttacggccacgttctaatgtcaatga |
548 |
Q |
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| T |
36992543 |
gagatcagacactcctgtatcgagctgctaaaagaagagaaatggaactatcattggatcctcctccgctgaatttacggccacgttctaatgtcaatga |
36992642 |
T |
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| Q |
549 |
accagttgtcgcatttg |
565 |
Q |
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| T |
36992643 |
accagttgtcgcatttg |
36992659 |
T |
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