View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3308_low_64 (Length: 239)
Name: NF3308_low_64
Description: NF3308
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3308_low_64 |
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Alignment Details
Target: chr1 (Bit Score: 161; Significance: 5e-86; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 16 - 190
Target Start/End: Complemental strand, 46633476 - 46633305
Alignment:
| Q |
16 |
gtcaactagtgatggactaagtaaatcatcaaagaaaataataaacaactctttagtaaaacagtgctgttctgaaatatatctaacttggtaacattta |
115 |
Q |
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| T |
46633476 |
gtcaactagtgatggactaagtaaatcatcaaagaaaataa---acaactctttagtaaaacagtgctgttctgaaatatatctaacttggtaacattta |
46633380 |
T |
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| Q |
116 |
tacatgacaaaaaaccattacaaatccttcacacaaatgtaattcacagacagtacaaacaatgaatataagaag |
190 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46633379 |
tacatgacaaaaaaccattacaaatccttcacacaaatgtaattcacagacagtacaaacaatgaatataagaag |
46633305 |
T |
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