View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3308_low_68 (Length: 237)
Name: NF3308_low_68
Description: NF3308
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3308_low_68 |
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Alignment Details
Target: chr1 (Bit Score: 104; Significance: 6e-52; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 119 - 222
Target Start/End: Complemental strand, 51378513 - 51378410
Alignment:
| Q |
119 |
attctcaaatgttacccttgacggtaagcaaacttctacatattcaccaaattgaattacatactttcggaggcactcttaatcgccaaatgctgcacca |
218 |
Q |
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| T |
51378513 |
attctcaaatgttacccttgacggtaagcaaacttctacatattcaccaaattgaattacatactttcggaggcactcttaatcgccaaatgctgcacca |
51378414 |
T |
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| Q |
219 |
atct |
222 |
Q |
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|||| |
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| T |
51378413 |
atct |
51378410 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 51378719 - 51378638
Alignment:
| Q |
1 |
cgcatccaatcattccaattcaaccatatcccccataccaacaccaagacacgactgacaatcctgcaatatgccaacaatc |
82 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
51378719 |
cgcatccaatcattccaattcaaccatatcccccataccaacaccaagacacgactgacaatcctgcaatatgccgacaatc |
51378638 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 58 - 114
Target Start/End: Complemental strand, 51378624 - 51378568
Alignment:
| Q |
58 |
acaatcctgcaatatgccaacaatcaactttagccaagcattgaaaaagtatatgcc |
114 |
Q |
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| T |
51378624 |
acaatcctgcaatatgccaacaatcaactttagccaagcattgaaaaagtatatgcc |
51378568 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 149 - 221
Target Start/End: Original strand, 51791275 - 51791347
Alignment:
| Q |
149 |
aacttctacatattcaccaaattgaattacatactttcggaggcactcttaatcgccaaatgctgcaccaatc |
221 |
Q |
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| T |
51791275 |
aacttcgacatattcaccaaattaaattatatactttcggaggccctcttgctcaccaaatactgtaccaatc |
51791347 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 61
Target Start/End: Original strand, 51790994 - 51791046
Alignment:
| Q |
9 |
atcattccaattcaaccatatcccccataccaacaccaagacacgactgacaa |
61 |
Q |
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|||||| |||||||||||||||||||| |||||| || ||||||||||||| |
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| T |
51790994 |
atcattacaattcaaccatatcccccagaccaacctgaaaacacgactgacaa |
51791046 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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