View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3308_low_69 (Length: 236)
Name: NF3308_low_69
Description: NF3308
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3308_low_69 |
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| [»] scaffold0049 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 36240459 - 36240679
Alignment:
| Q |
1 |
agagtcctctatatctatcctcacttcaagcacaccactaacagagttaccaaacctacagtcatctaattgtaaattgaaatcaaggagactgctatac |
100 |
Q |
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| T |
36240459 |
agagtcctctatatctatcctcacttcaagcacaccactaacagagttaccaaacctacagtcatctaattgtaaattgaaatcaaggagactgctatac |
36240558 |
T |
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| Q |
101 |
aaacaccaattgaaaataa-nnnnnnnggtcatatgacagaccatataactattaaatcgtcaagaacaaaatttaagtttagtttatcttaatataact |
199 |
Q |
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| T |
36240559 |
aaacaccaattgaaaataattttttttggtcatatgacagaccatataactattaaatcgtcaagaacaaaatttaagtttagtttatcttaatataact |
36240658 |
T |
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| Q |
200 |
aaatctcagtttcctttattc |
220 |
Q |
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||||||||||||||||||||| |
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| T |
36240659 |
aaatctcagtttcctttattc |
36240679 |
T |
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Target: scaffold0049 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: scaffold0049
Description:
Target: scaffold0049; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 40 - 93
Target Start/End: Original strand, 9749 - 9802
Alignment:
| Q |
40 |
aacagagttaccaaacctacagtcatctaattgtaaattgaaatcaaggagact |
93 |
Q |
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| T |
9749 |
aacagagttaccaaacctacagtcatctaattgtaaattgaaatcaaggagact |
9802 |
T |
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