View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3308_low_7 (Length: 565)
Name: NF3308_low_7
Description: NF3308
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3308_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 492; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 492; E-Value: 0
Query Start/End: Original strand, 6 - 549
Target Start/End: Complemental strand, 26003591 - 26003049
Alignment:
| Q |
6 |
cattgatatcgggcactgaacatgtaattacattcattttactaaattataactggtgtcgtgttagttgtctgtgtttgttttaatgaaacttcaaatg |
105 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||| |||||||||||||||| | |
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| T |
26003591 |
cattgatatcgggcactgaacatgtaattacattcattttactaaattata-ctggtgtcgtgttagtcgtctgtgtttgtattaatgaaacttcaaacg |
26003493 |
T |
|
| Q |
106 |
tagttttgtagtttgatgatcataacacttatatcatcgaaagagcctcgcgatacagataaatctacaagtttcttacaagcttggaaggatccttgtc |
205 |
Q |
| |
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||||| ||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
26003492 |
tagttctgtagtttgatgatcataacacttatatcgtcgatagagcctcgcgatacagataaatctacaagtttcttacaagctgggaaggatccttgtc |
26003393 |
T |
|
| Q |
206 |
tattgctccctgcacaataaggatgtgctatatctactgcttcttgattactaacctgaacaagattgaaaagagaaacttaatcagttactaagttaag |
305 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26003392 |
tattgctccctgcacaataaggatgtgctatatctactgcttcttgattactaacctgaacaagattgaaaagagaaacttaatcagttactaagttaag |
26003293 |
T |
|
| Q |
306 |
actaaactatagttgaactgtgatttcttgaaagaatttataattaacatcgcaattaattggtcaagttctataccttttcccataatccatctgaagc |
405 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
26003292 |
actaaactatagttgaactgtgatttcttgaaagaatttataattaacatcgcaattaattggtcaagtcctataccttttcccataatccatctgaagc |
26003193 |
T |
|
| Q |
406 |
taagattaaaaagtcatgatgaggttcaattttgagaactttggtctcaggttctgctatcacatattgtttcatgtgtctatctccaatgctccttgaa |
505 |
Q |
| |
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||||||||| ||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26003192 |
taagattaacaagtcatgatgaggttcaattctgagtactttggtctcaggttctgctatcacatattgtttcatgtgtctatctccaatgctccttgaa |
26003093 |
T |
|
| Q |
506 |
acagcaagagatccttggattctccaaacaccgcggcacatatc |
549 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26003092 |
acagcaagagatccttggattctccaaacaccgcggcacatatc |
26003049 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 96 - 550
Target Start/End: Complemental strand, 26018238 - 26017794
Alignment:
| Q |
96 |
acttcaaatgtagttttgtagtttgatgatcataacacttatatcatcgaaagagcctcgcgatacagataaatctacaagtttcttacaagcttggaag |
195 |
Q |
| |
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|||||||||||||||||||| |||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26018238 |
acttcaaatgtagttttgtaatttgattatcataacacttatatcatcgatagagcctcgcgatacagataaatctacaagtttcttacaagcttggaag |
26018139 |
T |
|
| Q |
196 |
gatccttgtctattgctccctgcacaataaggatgtgctatatctactgcttcttgattactaacctgaacaagattgaaaagagaaacttaatcagtta |
295 |
Q |
| |
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|||||||||||||||||| || |||| ||||| || | |||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
26018138 |
gatccttgtctattgctctctacacataaaggaccagcaagatctacagcttcttgattactaacctgaacaagattgaaaagagaaactaaatcagtta |
26018039 |
T |
|
| Q |
296 |
ctaagttaagactaaactatagttgaactg--tgatttcttgaaagaatttataattaacatcgcaattaattggtcaagttctataccttttcccataa |
393 |
Q |
| |
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|| |||| | || |||||||||| | |||| || ||||| | |||| ||||||||||| | |||| |||||||||||||||||| |
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| T |
26018038 |
ctcgtttaatagta--ctatagttgagcaaattgatctcatgaaaaga----------acattgcaattaattgatgaagtcctataccttttcccataa |
26017951 |
T |
|
| Q |
394 |
tccatctgaagctaagattaaaaagtcatgatgaggttcaattttgagaactttggtctcaggttctgctatcacatattgtttcatgtgtctatctcca |
493 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26017950 |
tccatctgaagctaagattaaaaagtcatgatgaggttcaattctgagtactttggtctcaggttctgctatcacatattgtttcatgtgtctatctcca |
26017851 |
T |
|
| Q |
494 |
atgctccttgaaacagcaagagatccttggattctccaaacaccgcggcacatatct |
550 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
26017850 |
atgctccttgaaacagcaagagatccttggattctccaaacaccgcggcacatatct |
26017794 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 66; Significance: 7e-29; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 379 - 540
Target Start/End: Complemental strand, 30374471 - 30374310
Alignment:
| Q |
379 |
taccttttcccataatccatctgaagctaagattaaaaagtcatgatgaggttcaattttgagaactttggtctcaggttctgctatcacatattgtttc |
478 |
Q |
| |
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|||||| ||||||||||||||||||||||| ||||| |||||||| | |||||||||| | | |||||| ||||| || || ||| |||| |||||||| |
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| T |
30374471 |
taccttatcccataatccatctgaagctaatattaacaagtcatgttcaggttcaattctaataactttagtctcgggctccgctgtcacccattgtttc |
30374372 |
T |
|
| Q |
479 |
atgtgtctatctccaatgctccttgaaacagcaagagatccttggattctccaaacaccgcg |
540 |
Q |
| |
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| ||||| |||||||| | ||||| ||||||||||||||||| || |||||||||||||| |
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| T |
30374371 |
aagtgtcggtctccaattcctcttgatacagcaagagatccttgaatcctccaaacaccgcg |
30374310 |
T |
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