View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3308_low_70 (Length: 236)
Name: NF3308_low_70
Description: NF3308
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3308_low_70 |
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Alignment Details
Target: chr8 (Bit Score: 127; Significance: 1e-65; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 58 - 220
Target Start/End: Original strand, 8151592 - 8151753
Alignment:
| Q |
58 |
gcaacaagcaaattgcgaaaggagtctaatcttttcaaggcaaactacatgagtgtatgccttctcgtagtcgataccctcttcttgattgtatcatttt |
157 |
Q |
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| T |
8151592 |
gcaacaagcaaatcgcgaaaggagtctaatcttttcaaggcggactacatgagtgtatgtcttctcgtagtcga-accctcttcttgattgtatcatttt |
8151690 |
T |
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| Q |
158 |
ttccactaagtgtgctttatttcgagtgatgattccattttcatctaatttgttcgtaaagac |
220 |
Q |
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| T |
8151691 |
ttccactaagcgtgctttatttccagtgatgattccattttcatctaatttgttcataaagac |
8151753 |
T |
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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 24 - 58
Target Start/End: Original strand, 8151451 - 8151485
Alignment:
| Q |
24 |
agagaatcttcattaatttaaaaatataatcttgg |
58 |
Q |
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| T |
8151451 |
agagaatcttcattaattttaaaatataatcttgg |
8151485 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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