View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3308_low_71 (Length: 235)

Name: NF3308_low_71
Description: NF3308
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3308_low_71
NF3308_low_71
[»] chr7 (11 HSPs)
chr7 (8-229)||(21592624-21592846)
chr7 (8-110)||(18153357-18153460)
chr7 (16-109)||(40635506-40635598)
chr7 (8-116)||(30770050-30770159)
chr7 (33-107)||(21801716-21801791)
chr7 (33-109)||(9548828-9548905)
chr7 (34-109)||(20093790-20093866)
chr7 (14-96)||(47295564-47295647)
chr7 (32-109)||(38612810-38612888)
chr7 (189-229)||(11952761-11952801)
chr7 (32-109)||(29165101-29165178)
[»] scaffold0096 (1 HSPs)
scaffold0096 (8-109)||(10741-10843)
[»] scaffold0265 (2 HSPs)
scaffold0265 (8-109)||(17282-17384)
scaffold0265 (8-105)||(15106-15204)
[»] chr6 (15 HSPs)
chr6 (8-109)||(29094885-29094987)
chr6 (17-110)||(27964962-27965056)
chr6 (8-109)||(17756886-17756988)
chr6 (32-109)||(18736253-18736331)
chr6 (34-110)||(23574648-23574725)
chr6 (32-107)||(18043531-18043607)
chr6 (32-110)||(15369491-15369570)
chr6 (8-109)||(29482820-29482922)
chr6 (34-109)||(15119590-15119665)
chr6 (34-109)||(21508507-21508583)
chr6 (34-110)||(4409451-4409529)
chr6 (32-109)||(14910858-14910936)
chr6 (34-103)||(18729176-18729246)
chr6 (8-109)||(23524249-23524351)
chr6 (32-107)||(19857705-19857781)
[»] chr1 (8 HSPs)
chr1 (8-109)||(21815425-21815527)
chr1 (8-105)||(21817605-21817703)
chr1 (8-109)||(24973756-24973858)
chr1 (9-107)||(49472432-49472531)
chr1 (8-110)||(19967287-19967390)
chr1 (8-107)||(19441982-19442082)
chr1 (8-71)||(33029022-33029085)
chr1 (32-110)||(9859224-9859303)
[»] chr5 (10 HSPs)
chr5 (8-109)||(23495576-23495678)
chr5 (8-109)||(20899465-20899567)
chr5 (8-110)||(36712518-36712621)
chr5 (8-109)||(13537958-13538060)
chr5 (8-104)||(33622365-33622462)
chr5 (8-109)||(22510210-22510312)
chr5 (32-109)||(24095445-24095523)
chr5 (16-57)||(5590619-5590660)
chr5 (32-109)||(28067893-28067972)
chr5 (34-71)||(42792735-42792772)
[»] chr4 (11 HSPs)
chr4 (8-109)||(13861542-13861644)
chr4 (8-109)||(16396135-16396237)
chr4 (8-109)||(18284484-18284586)
chr4 (14-110)||(25239929-25240026)
chr4 (35-109)||(8082300-8082375)
chr4 (8-109)||(45313374-45313476)
chr4 (32-111)||(12885532-12885612)
chr4 (32-110)||(26780683-26780762)
chr4 (32-111)||(10985581-10985661)
chr4 (8-57)||(17282412-17282461)
chr4 (199-230)||(10491356-10491387)
[»] chr2 (8 HSPs)
chr2 (8-109)||(27347397-27347499)
chr2 (8-109)||(25133793-25133895)
chr2 (32-109)||(3770513-3770591)
chr2 (33-109)||(23755687-23755764)
chr2 (8-109)||(23932908-23933010)
chr2 (32-110)||(41266064-41266143)
chr2 (8-109)||(19092949-19093051)
chr2 (34-110)||(3105459-3105536)
[»] chr8 (12 HSPs)
chr8 (16-109)||(25820953-25821047)
chr8 (8-107)||(11709609-11709709)
chr8 (34-117)||(22609355-22609438)
chr8 (14-110)||(41280676-41280773)
chr8 (34-108)||(32008884-32008959)
chr8 (32-109)||(7454521-7454599)
chr8 (40-110)||(18040356-18040426)
chr8 (32-109)||(33273391-33273469)
chr8 (8-110)||(7999877-7999980)
chr8 (8-106)||(18573889-18573988)
chr8 (200-229)||(22739948-22739977)
chr8 (8-72)||(17775848-17775912)
[»] scaffold0362 (1 HSPs)
scaffold0362 (14-110)||(7217-7314)
[»] scaffold1272 (1 HSPs)
scaffold1272 (8-110)||(1972-2075)
[»] scaffold0026 (1 HSPs)
scaffold0026 (32-105)||(151164-151238)
[»] scaffold0008 (2 HSPs)
scaffold0008 (8-109)||(253542-253644)
scaffold0008 (8-107)||(242902-243002)
[»] scaffold0192 (1 HSPs)
scaffold0192 (14-110)||(12555-12652)
[»] scaffold0084 (1 HSPs)
scaffold0084 (9-109)||(54473-54574)
[»] scaffold0034 (1 HSPs)
scaffold0034 (8-107)||(56229-56329)
[»] scaffold0280 (1 HSPs)
scaffold0280 (35-109)||(909-984)
[»] scaffold0150 (1 HSPs)
scaffold0150 (32-109)||(29926-30004)
[»] scaffold0042 (1 HSPs)
scaffold0042 (8-109)||(68902-69004)
[»] chr3 (3 HSPs)
chr3 (75-109)||(31530488-31530522)
chr3 (200-230)||(42369934-42369964)
chr3 (41-109)||(19790537-19790606)
[»] scaffold1121 (1 HSPs)
scaffold1121 (199-230)||(378-409)
[»] scaffold0483 (1 HSPs)
scaffold0483 (8-55)||(9359-9406)
[»] scaffold0989 (1 HSPs)
scaffold0989 (8-58)||(1444-1494)
[»] scaffold0083 (1 HSPs)
scaffold0083 (32-109)||(4065-4143)


Alignment Details
Target: chr7 (Bit Score: 187; Significance: 1e-101; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 8 - 229
Target Start/End: Complemental strand, 21592846 - 21592624
Alignment:
Q  8 aagggttgtgtcgcgggtaatttagccaaacgtggtgtttgggctttggatgatattgggccta-gtgaatgggtcaaagattcttttggccggtccaga 106  Q
    ||||| ||||||||| ||||||||||||||| |||||||||| ||||||||| ||||||||||| ||||||||| |||||||||||||||||||||||||    
T  21592846 aaggggtgtgtcgcgagtaatttagccaaacatggtgtttggactttggatggtattgggcctaagtgaatgggccaaagattcttttggccggtccaga 21592747  T
Q  107 acaagaaccaatactagaatcagcagacatgattttctcttgggatcttttttgtgaaagagttaagtggctaagctcaaatatgaagtttcctttagtt 206  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  21592746 acaagaaccaatactagaatcagcagacatgattttctcttgggatcttttttgtgaaagagttaagtggctaagctcaaatatgaagtttcttttagtt 21592647  T
Q  207 ataggtttgtgttttgatgatgt 229  Q
    |||||||||||||||||||||||    
T  21592646 ataggtttgtgttttgatgatgt 21592624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 8 - 110
Target Start/End: Original strand, 18153357 - 18153460
Alignment:
Q  8 aagggttgtgtcgcgggtaatttagccaaacgtggtgtttgggctttggatgatattgggcct-agtgaatgggtcaaagattcttttggccggtccaga 106  Q
    ||||| ||||||||| ||||||| ||||||| |||||||||||||||| |   |||||||||| ||| |||||| ||||||| |||||||||||||||||    
T  18153357 aaggggtgtgtcgcgagtaattttgccaaacatggtgtttgggctttgtagtgtattgggcctaagtaaatgggccaaagatccttttggccggtccaga 18153456  T
Q  107 acaa 110  Q
    ||||    
T  18153457 acaa 18153460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 16 - 109
Target Start/End: Complemental strand, 40635598 - 40635506
Alignment:
Q  16 tgtcgcgggtaatttagccaaacgtggtgtttgggctttggatgatattgggcct-agtgaatgggtcaaagattcttttggccggtccagaaca 109  Q
    ||||||| ||||||| |||||||||||||||| | ||||||||||||||||| || |||||||||| ||||||| |||||| || ||||||||||    
T  40635598 tgtcgcgagtaattttgccaaacgtggtgttt-gactttggatgatattgggtctaagtgaatggg-caaagatccttttgaccagtccagaaca 40635506  T

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Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 8 - 116
Target Start/End: Complemental strand, 30770159 - 30770050
Alignment:
Q  8 aagggttgtgtcgcgggtaatttagccaaacgtggtgtttgggctttggatgatattgggccta-gtgaatgggtcaaagattcttttggccggtccaga 106  Q
    ||||| ||||||||  |||| || | |||||||| ||||||||||||| ||  ||||||||||| || ||||| |||||| | |||||||||||||||||    
T  30770159 aaggggtgtgtcgcaagtaacttcgtcaaacgtgatgtttgggctttgaattgtattgggcctaagtaaatggttcaaaggtccttttggccggtccaga 30770060  T
Q  107 acaagaacca 116  Q
    |||| |||||    
T  30770059 acaacaacca 30770050  T

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Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 33 - 107
Target Start/End: Complemental strand, 21801791 - 21801716
Alignment:
Q  33 ccaaacgtggtgtttgggctttggatgatattgggccta-gtgaatgggtcaaagattcttttggccggtccagaa 107  Q
    |||||||||||||||||| ||| |||  ||||||||||| || |||||| ||||||| ||||||||||||||||||    
T  21801791 ccaaacgtggtgtttgggttttagatagtattgggcctaagtaaatgggccaaagatccttttggccggtccagaa 21801716  T

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Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 33 - 109
Target Start/End: Complemental strand, 9548905 - 9548828
Alignment:
Q  33 ccaaacgtggtgtttgggctttggatgatattgggccta-gtgaatgggtcaaagattcttttggccggtccagaaca 109  Q
    |||||||||| |||||||||||||||  ||||||| ||| || |||||| |||| || ||||||||||||||||||||    
T  9548905 ccaaacgtggcgtttgggctttggattgtattgggactacgtaaatgggccaaacatccttttggccggtccagaaca 9548828  T

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Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 34 - 109
Target Start/End: Original strand, 20093790 - 20093866
Alignment:
Q  34 caaacgtggtgtttgggctttggatgatattgggccta-gtgaatgggtcaaagattcttttggccggtccagaaca 109  Q
    |||||||||||||||| ||||||||  |||||| |||| || |||||||||||||| |||||||||| | |||||||    
T  20093790 caaacgtggtgtttggactttggattgtattggacctaagtaaatgggtcaaagatccttttggccgattcagaaca 20093866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 14 - 96
Target Start/End: Complemental strand, 47295647 - 47295564
Alignment:
Q  14 tgtgtcgcgggtaatttagccaaacgtggtgtttgggctttggatgatattgggcct-agtgaatgggtcaaagattcttttgg 96  Q
    ||||||||| |||||||  ||||||||||||||||||||||| |   |||||| ||| ||| |||||||||||||| |||||||    
T  47295647 tgtgtcgcgagtaatttttccaaacgtggtgtttgggctttgtagtgtattggacctaagtaaatgggtcaaagatccttttgg 47295564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 32 - 109
Target Start/End: Original strand, 38612810 - 38612888
Alignment:
Q  32 gccaaacgtggtgtttgggctttggatgatattgggcct-agtgaatgggtcaaagattcttttggccggtccagaaca 109  Q
    |||||||||||||||||||||||| ||  ||||| |||| ||| |||||||||||| | |||||| || ||||||||||    
T  38612810 gccaaacgtggtgtttgggctttgaatagtattgagcctaagtaaatgggtcaaagctccttttgaccagtccagaaca 38612888  T

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Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 189 - 229
Target Start/End: Original strand, 11952761 - 11952801
Alignment:
Q  189 atgaagtttcctttagttataggtttgtgttttgatgatgt 229  Q
    ||||||||||||||| |||||||||| ||||||||||||||    
T  11952761 atgaagtttcctttaattataggtttttgttttgatgatgt 11952801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 32 - 109
Target Start/End: Original strand, 29165101 - 29165178
Alignment:
Q  32 gccaaacgtggtgtttgggctttggatgatattgggcct-agtgaatgggtcaaagattcttttggccggtccagaaca 109  Q
    ||||||||||||||||||||||||| |  |||||||||| | | |||||||||||   || ||||||||||||||||||    
T  29165101 gccaaacgtggtgtttgggctttgggttgtattgggcctaaataaatgggtcaaa-tgtcgtttggccggtccagaaca 29165178  T

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Target: scaffold0096 (Bit Score: 67; Significance: 7e-30; HSPs: 1)
Name: scaffold0096
Description:

Target: scaffold0096; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 8 - 109
Target Start/End: Complemental strand, 10843 - 10741
Alignment:
Q  8 aagggttgtgtcgcgggtaatttagccaaacgtggtgtttgggctttggatgatattgggcct-agtgaatgggtcaaagattcttttggccggtccaga 106  Q
    ||||| ||||||||| ||||||| |||||||||||||||||||||||||||| |||||||||| |||||||||| ||||||| |||||||||| ||||||    
T  10843 aaggggtgtgtcgcgagtaattttgccaaacgtggtgtttgggctttggatggtattgggcctaagtgaatgggccaaagatccttttggccgatccaga 10744  T
Q  107 aca 109  Q
    |||    
T  10743 aca 10741  T

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Target: scaffold0265 (Bit Score: 63; Significance: 2e-27; HSPs: 2)
Name: scaffold0265
Description:

Target: scaffold0265; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 8 - 109
Target Start/End: Original strand, 17282 - 17384
Alignment:
Q  8 aagggttgtgtcgcgggtaatttagccaaacgtggtgtttgggctttggatgatattgggcct-agtgaatgggtcaaagattcttttggccggtccaga 106  Q
    ||||| |||||| || ||||||| ||||||||||||||||||| |||||||| || ||||||| |||||||||| |||||||||||||||||||||||||    
T  17282 aaggggtgtgtcacgagtaattttgccaaacgtggtgtttgggatttggatggtactgggcctaagtgaatgggccaaagattcttttggccggtccaga 17381  T
Q  107 aca 109  Q
    |||    
T  17382 aca 17384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0265; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 8 - 105
Target Start/End: Original strand, 15106 - 15204
Alignment:
Q  8 aagggttgtgtcgcgggtaatttagccaaacgtggtgtttgggctttggatgatattgggcct-agtgaatgggtcaaagattcttttggccggtccag 105  Q
    ||||| ||||||||| ||||||| |||||||||||||||||||||||||||  || ||||||| |||||||||| ||||||| ||||||||||||||||    
T  15106 aaggggtgtgtcgcgagtaattttgccaaacgtggtgtttgggctttggatagtactgggcctaagtgaatgggccaaagatccttttggccggtccag 15204  T

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Target: chr6 (Bit Score: 63; Significance: 2e-27; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 8 - 109
Target Start/End: Complemental strand, 29094987 - 29094885
Alignment:
Q  8 aagggttgtgtcgcgggtaatttagccaaacgtggtgtttgggctttggatgatattgggcct-agtgaatgggtcaaagattcttttggccggtccaga 106  Q
    ||||| ||||||||| ||||||| |||||||||||||||||||||||||||| |||||||||| |||||||||| |||||||  |||||| |||||||||    
T  29094987 aaggggtgtgtcgcgagtaattttgccaaacgtggtgtttgggctttggatggtattgggcctaagtgaatgggccaaagatctttttggtcggtccaga 29094888  T
Q  107 aca 109  Q
    |||    
T  29094887 aca 29094885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 17 - 110
Target Start/End: Original strand, 27964962 - 27965056
Alignment:
Q  17 gtcgcgggtaatttagccaaacgtggtgtttgggctttggatgatattgggcct-agtgaatgggtcaaagattcttttggccggtccagaacaa 110  Q
    |||||| |||||||  |||||||||||||||||||||||||||||||||||||| ||| |||||| ||||||| |||||||| |||||| |||||    
T  27964962 gtcgcgagtaattttaccaaacgtggtgtttgggctttggatgatattgggcctaagtaaatgggccaaagatccttttggctggtccaaaacaa 27965056  T

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Target: chr6; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 8 - 109
Target Start/End: Complemental strand, 17756988 - 17756886
Alignment:
Q  8 aagggttgtgtcgcgggtaatttagccaaacgtggtgtttgggctttggatgatattgggcct-agtgaatgggtcaaagattcttttggccggtccaga 106  Q
    ||||| ||||||||| ||||||| ||||||||||||||||||||||| |||  |||| ||||| ||| |||| ||||||||| |||||||||||||| ||    
T  17756988 aaggggtgtgtcgcgagtaattttgccaaacgtggtgtttgggctttcgattgtattaggcctaagtaaatgtgtcaaagatccttttggccggtcccga 17756889  T
Q  107 aca 109  Q
    |||    
T  17756888 aca 17756886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 32 - 109
Target Start/End: Original strand, 18736253 - 18736331
Alignment:
Q  32 gccaaacgtggtgtttgggctttggatgatattgggcct-agtgaatgggtcaaagattcttttggccggtccagaaca 109  Q
    |||||||||||||||||||||||||||  |||||||||| ||| |||||| |||| || ||||||||||||||||||||    
T  18736253 gccaaacgtggtgtttgggctttggatattattgggcctaagtaaatgggccaaaaatccttttggccggtccagaaca 18736331  T

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Target: chr6; HSP #5
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 34 - 110
Target Start/End: Original strand, 23574648 - 23574725
Alignment:
Q  34 caaacgtggtgtttgggctttggatgatattgggcct-agtgaatgggtcaaagattcttttggccggtccagaacaa 110  Q
    |||||||||||||||||||||||||  |||||||||| ||| |||||| ||||| | ||||||| |||||||||||||    
T  23574648 caaacgtggtgtttgggctttggattgtattgggcctaagtaaatgggccaaaggtccttttgggcggtccagaacaa 23574725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 32 - 107
Target Start/End: Original strand, 18043531 - 18043607
Alignment:
Q  32 gccaaacgtggtgtttgggctttggatgatattgggcct-agtgaatgggtcaaagattcttttggccggtccagaa 107  Q
    |||||||||| ||||||||||||| ||| |||||||||| ||| |||||| ||||| | ||||||||||||||||||    
T  18043531 gccaaacgtgatgtttgggctttgaatggtattgggcctaagtaaatgggccaaaggtccttttggccggtccagaa 18043607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 32 - 110
Target Start/End: Complemental strand, 15369570 - 15369491
Alignment:
Q  32 gccaaacgtggtgtttgggctttggatgatattgggcct-agtgaatgggtcaaagattcttttggccggtccagaacaa 110  Q
    ||||||||||||||||| ||||||||| ||||||||| | ||| |||| | | ||||| |||||||||||||||||||||    
T  15369570 gccaaacgtggtgtttgagctttggattatattgggcttaagtaaatgcgcctaagatccttttggccggtccagaacaa 15369491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 8 - 109
Target Start/End: Original strand, 29482820 - 29482922
Alignment:
Q  8 aagggttgtgtcgcgggtaatttagccaaacgtggtgtttgggctttggatgatattgggcct-agtgaatgggtcaaagattcttttggccggtccaga 106  Q
    ||||| ||||||||  ||||| | ||||||||||| |||||||||||||||  | |||||||| ||| |||||| ||||||| |||||||||  ||||||    
T  29482820 aaggggtgtgtcgcaagtaatgttgccaaacgtggcgtttgggctttggattgtgttgggcctgagtaaatgggccaaagatccttttggcctttccaga 29482919  T
Q  107 aca 109  Q
    |||    
T  29482920 aca 29482922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 34 - 109
Target Start/End: Complemental strand, 15119665 - 15119590
Alignment:
Q  34 caaacgtggtgtttgggctttggatgatattgggcct-agtgaatgggtcaaagattcttttggccggtccagaaca 109  Q
    ||||||||||||||||||| |||||  |||||||||| ||| |||||| | ||| | ||||||||||||||||||||    
T  15119665 caaacgtggtgtttgggctctggattgtattgggcctaagtaaatggg-ccaaggtccttttggccggtccagaaca 15119590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 34 - 109
Target Start/End: Complemental strand, 21508583 - 21508507
Alignment:
Q  34 caaacgtggtgtttgggctttggatgatattgggcct-agtgaatgggtcaaagattcttttggccggtccagaaca 109  Q
    ||||||||||||||| |||||||||  |||||||||| ||| |||||| ||||| | | |||||||| |||||||||    
T  21508583 caaacgtggtgtttgagctttggattgtattgggcctaagtaaatgggccaaaggtccctttggccgatccagaaca 21508507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 34 - 110
Target Start/End: Original strand, 4409451 - 4409529
Alignment:
Q  34 caaacgtggtgttt-gggctttggatgatattgggcct-agtgaatgggtcaaagattcttttggccggtccagaacaa 110  Q
    |||||||||||||| |||||||| |||||||||||||| ||| |||||| ||||  | |||||||||| || |||||||    
T  4409451 caaacgtggtgttttgggctttgaatgatattgggcctaagtaaatgggccaaatgtccttttggccgatcgagaacaa 4409529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 32 - 109
Target Start/End: Original strand, 14910858 - 14910936
Alignment:
Q  32 gccaaacgtggtgtttgggctttggatgatattgggcct-agtgaatgggtcaaagattcttttggccggtccagaaca 109  Q
    |||||| ||||||||||| ||||||||  ||||| |||| ||| ||||||  |||| | ||||||||||||||||||||    
T  14910858 gccaaatgtggtgtttggactttggattctattgtgcctaagtaaatgggcaaaaggtccttttggccggtccagaaca 14910936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 34 - 103
Target Start/End: Original strand, 18729176 - 18729246
Alignment:
Q  34 caaacgtggtgtttgggctttggatgatattgggcct-agtgaatgggtcaaagattcttttggccggtcc 103  Q
    ||||||||||||||||| |||||||  |||| ||||| ||| |||||| ||||||| ||||||||| ||||    
T  18729176 caaacgtggtgtttgggttttggatagtattaggcctaagtaaatgggccaaagatccttttggcctgtcc 18729246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 109
Target Start/End: Original strand, 23524249 - 23524351
Alignment:
Q  8 aagggttgtgtcgcgggtaatttagccaaacgtggtgtttgggctttggatgatattgggcct-agtgaatgggtcaaagattcttttggccggtccaga 106  Q
    ||||| ||||||||  |||| || || |||||||||||||||||||||| |  |||||  ||| ||| |||||| ||||| | | |||||||||||||||    
T  23524249 aaggggtgtgtcgcaagtaactttgcaaaacgtggtgtttgggctttgggttgtattgtacctaagtaaatgggccaaaggtccctttggccggtccaga 23524348  T
Q  107 aca 109  Q
    |||    
T  23524349 aca 23524351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 32 - 107
Target Start/End: Complemental strand, 19857781 - 19857705
Alignment:
Q  32 gccaaacgtggtgtttgggctttggatgatattgggcct-agtgaatgggtcaaagattcttttggccggtccagaa 107  Q
    ||||||||||||||||| |||||||||  ||||| |||| ||| |||| | ||||| | ||||||| ||||||||||    
T  19857781 gccaaacgtggtgtttgagctttggattgtattgagcctaagtaaatgcgccaaaggtccttttggtcggtccagaa 19857705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 63; Significance: 2e-27; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 8 - 109
Target Start/End: Complemental strand, 21815527 - 21815425
Alignment:
Q  8 aagggttgtgtcgcgggtaatttagccaaacgtggtgtttgggctttggatgatattgggcct-agtgaatgggtcaaagattcttttggccggtccaga 106  Q
    ||||| |||||| || ||||||| ||||||||||||||||||| |||||||| || ||||||| |||||||||| |||||||||||||||||||||||||    
T  21815527 aaggggtgtgtcacgagtaattttgccaaacgtggtgtttgggatttggatggtactgggcctaagtgaatgggccaaagattcttttggccggtccaga 21815428  T
Q  107 aca 109  Q
    |||    
T  21815427 aca 21815425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 8 - 105
Target Start/End: Complemental strand, 21817703 - 21817605
Alignment:
Q  8 aagggttgtgtcgcgggtaatttagccaaacgtggtgtttgggctttggatgatattgggcct-agtgaatgggtcaaagattcttttggccggtccag 105  Q
    ||||| ||||||||| ||||||| |||||||||||||||||||||||||||  || ||||||| |||||||||| ||||||| ||||||||||||||||    
T  21817703 aaggggtgtgtcgcgagtaattttgccaaacgtggtgtttgggctttggatagtactgggcctaagtgaatgggccaaagatccttttggccggtccag 21817605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 8 - 109
Target Start/End: Complemental strand, 24973858 - 24973756
Alignment:
Q  8 aagggttgtgtcgcgggtaatttagccaaacgtggtgtttgggctttggatgatattgggcct-agtgaatgggtcaaagattcttttggccggtccaga 106  Q
    ||||| ||||||||  ||||||| || |||||||||||||||||||||||||||||||||||| ||| |||||  ||||||  ||||||||||||||| |    
T  24973858 aagggatgtgtcgcaagtaattttgcaaaacgtggtgtttgggctttggatgatattgggcctaagtaaatggaccaaagaaccttttggccggtccata 24973759  T
Q  107 aca 109  Q
    |||    
T  24973758 aca 24973756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 9 - 107
Target Start/End: Original strand, 49472432 - 49472531
Alignment:
Q  9 agggttgtgtcgcgggtaatttagccaaacgtggtgtttgggctttggatgatattgggcct-agtgaatgggtcaaagattcttttggccggtccagaa 107  Q
    |||| ||| ||||| ||||||| | |||||| ||||||||| ||||||||| |||||||||| ||| |||||||||||||| |||||| |||||||||||    
T  49472432 aggggtgtttcgcgagtaattttgtcaaacgcggtgtttggactttggatggtattgggcctaagtaaatgggtcaaagatccttttgcccggtccagaa 49472531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 8 - 110
Target Start/End: Complemental strand, 19967390 - 19967287
Alignment:
Q  8 aagggttgtgtcgcgggtaatttagccaaacgtggtgtttgggctttggatgatattgggcct-agtgaatgggtcaaagattcttttggccggtccaga 106  Q
    ||||| |||||||| ||||| || | |||||||||||||||| ||||||||  |||||||||| ||| ||||| |||||| | |||||| ||||||||||    
T  19967390 aaggggtgtgtcgcaggtaactttgtcaaacgtggtgtttggactttggatcgtattgggcctaagtaaatggatcaaaggtccttttgaccggtccaga 19967291  T
Q  107 acaa 110  Q
    ||||    
T  19967290 acaa 19967287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 8 - 107
Target Start/End: Complemental strand, 19442082 - 19441982
Alignment:
Q  8 aagggttgtgtcgcgggtaatttagccaaacgtggtgtttgggctttggatgatattgggcct-agtgaatgggtcaaagattcttttggccggtccaga 106  Q
    ||||| ||||||||  |||| || ||||||||||||||||| | |||||||  |||||||||| ||| |||||| ||||| | |||||||||||||||||    
T  19442082 aaggggtgtgtcgcaagtaactttgccaaacgtggtgtttgagttttggattgtattgggcctaagtaaatgggccaaaggtccttttggccggtccaga 19441983  T
Q  107 a 107  Q
    |    
T  19441982 a 19441982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 8 - 71
Target Start/End: Original strand, 33029022 - 33029085
Alignment:
Q  8 aagggttgtgtcgcgggtaatttagccaaacgtggtgtttgggctttggatgatattgggccta 71  Q
    ||||| ||||||||  ||||| ||| ||||||||||||||||||||||||| |||||| |||||    
T  33029022 aaggggtgtgtcgcaagtaatatagtcaaacgtggtgtttgggctttggattatattgtgccta 33029085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 32 - 110
Target Start/End: Original strand, 9859224 - 9859303
Alignment:
Q  32 gccaaacgtggtgtttgggctttggatgatattgggccta-gtgaatgggtcaaagattcttttggccggtccagaacaa 110  Q
    ||||||||||||||||||  |||||||  |||| || ||| || |||  ||||||||| |||||||||||||||||||||    
T  9859224 gccaaacgtggtgtttggattttggattgtattaggtctaagtcaataagtcaaagatccttttggccggtccagaacaa 9859303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 59; Significance: 4e-25; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 8 - 109
Target Start/End: Original strand, 23495576 - 23495678
Alignment:
Q  8 aagggttgtgtcgcgggtaatttagccaaacgtggtgtttgggctttggatgatattgggcct-agtgaatgggtcaaagattcttttggccggtccaga 106  Q
    ||||| ||||||||| ||||||| || ||||||||||||||||||||||||||||||| |||| ||| |||||||||||||| |||||| |||||||| |    
T  23495576 aaggggtgtgtcgcgagtaattttgcaaaacgtggtgtttgggctttggatgatattgagcctaagtaaatgggtcaaagatccttttgcccggtccaaa 23495675  T
Q  107 aca 109  Q
    |||    
T  23495676 aca 23495678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 8 - 109
Target Start/End: Complemental strand, 20899567 - 20899465
Alignment:
Q  8 aagggttgtgtcgcgggtaatttagccaaacgtggtgtttgggctttggatgatattgggcct-agtgaatgggtcaaagattcttttggccggtccaga 106  Q
    ||||| ||||||||| |||||||  ||||||||||||||||||||||||||| || ||||| | |||||||||| ||||||| |||||||| ||||||||    
T  20899567 aaggggtgtgtcgcgagtaatttttccaaacgtggtgtttgggctttggatggtactgggcttaagtgaatgggccaaagatccttttggctggtccaga 20899468  T
Q  107 aca 109  Q
    |||    
T  20899467 aca 20899465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 8 - 110
Target Start/End: Complemental strand, 36712621 - 36712518
Alignment:
Q  8 aagggttgtgtcgcgggtaatttagccaaacgtggtgtttgggctttggatgatattgggcct-agtgaatgggtcaaagattcttttggccggtccaga 106  Q
    ||||| ||||||||||||||||| |||||||||||||||| |||||||||   |||||||||| ||| |||||||||||||| ||||| ||| ||| |||    
T  36712621 aaggggtgtgtcgcgggtaattttgccaaacgtggtgtttaggctttggagtgtattgggcctaagtaaatgggtcaaagatccttttagccagtctaga 36712522  T
Q  107 acaa 110  Q
    ||||    
T  36712521 acaa 36712518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 8 - 109
Target Start/End: Original strand, 13537958 - 13538060
Alignment:
Q  8 aagggttgtgtcgcgggtaatttagccaaacgtggtgtttgggctttggatgatattgggcct-agtgaatgggtcaaagattcttttggccggtccaga 106  Q
    ||||| ||||||||| ||||||| |||||||||| ||||||||||||||||| |||||||||| ||| |||||  |||| |||||||||  |||||||||    
T  13537958 aaggggtgtgtcgcgagtaattttgccaaacgtgatgtttgggctttggatggtattgggcctaagtaaatggaccaaatattcttttgatcggtccaga 13538057  T
Q  107 aca 109  Q
    |||    
T  13538058 aca 13538060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 8 - 104
Target Start/End: Complemental strand, 33622462 - 33622365
Alignment:
Q  8 aagggttgtgtcgcgggtaatttagccaaacgtggtgtttgggctttggatgatattgggcct-agtgaatgggtcaaagattcttttggccggtcca 104  Q
    ||||| ||||||||| ||||||| ||||||| || ||||||||||||||||  |||||||| | ||| |||||||||||||| |||||||||||||||    
T  33622462 aaggggtgtgtcgcgagtaattttgccaaacatgatgtttgggctttggattgtattgggcttaagtaaatgggtcaaagatccttttggccggtcca 33622365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 8 - 109
Target Start/End: Original strand, 22510210 - 22510312
Alignment:
Q  8 aagggttgtgtcgcgggtaatttagccaaacgtggtgtttgggctttggatgatattgggccta-gtgaatgggtcaaagattcttttggccggtccaga 106  Q
    ||||| |||||||||||||||||   |||||||||||||||  ||||  |   ||||||||||| || |||||| ||||||| |||||||||||||||||    
T  22510210 aaggggtgtgtcgcgggtaattttatcaaacgtggtgtttgaactttatagtgtattgggcctaagtaaatgggccaaagatccttttggccggtccaga 22510309  T
Q  107 aca 109  Q
    |||    
T  22510310 aca 22510312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 32 - 109
Target Start/End: Original strand, 24095445 - 24095523
Alignment:
Q  32 gccaaacgtggtgtttgggctttggatgatattgggcct-agtgaatgggtcaaagattcttttggccggtccagaaca 109  Q
    |||||||||||| ||||||||||||||  |||||||||| |||  ||||| ||||  | ||||||||||||||||||||    
T  24095445 gccaaacgtggtatttgggctttggattgtattgggcctaagtagatgggccaaaactccttttggccggtccagaaca 24095523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 16 - 57
Target Start/End: Complemental strand, 5590660 - 5590619
Alignment:
Q  16 tgtcgcgggtaatttagccaaacgtggtgtttgggctttgga 57  Q
    ||||||| ||||||| ||||||||||||||||||||||||||    
T  5590660 tgtcgcgagtaattttgccaaacgtggtgtttgggctttgga 5590619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 32 - 109
Target Start/End: Complemental strand, 28067972 - 28067893
Alignment:
Q  32 gccaaacgtggtgtttgggcttt-ggatgatattgggccta-gtgaatgggtcaaagattcttttggccggtccagaaca 109  Q
    ||||||||||||| ||| ||||| ||||  |||||||| || || | |||||||||||| ||||||||||||||||||||    
T  28067972 gccaaacgtggtgcttgtgcttttggattgtattgggcgtaagtaagtgggtcaaagatccttttggccggtccagaaca 28067893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 34 - 71
Target Start/End: Original strand, 42792735 - 42792772
Alignment:
Q  34 caaacgtggtgtttgggctttggatgatattgggccta 71  Q
    ||||||||| ||||||||||||| ||||||||||||||    
T  42792735 caaacgtggagtttgggctttggttgatattgggccta 42792772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 59; Significance: 4e-25; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 8 - 109
Target Start/End: Original strand, 13861542 - 13861644
Alignment:
Q  8 aagggttgtgtcgcgggtaatttagccaaacgtggtgtttgggctttggatgatattgggcct-agtgaatgggtcaaagattcttttggccggtccaga 106  Q
    ||||| ||||||||| |||||||  ||| ||||||||||||||||||||||| |||||||||| ||| |||| ||||||||| |||||||||||||||||    
T  13861542 aaggggtgtgtcgcgagtaattttaccagacgtggtgtttgggctttggatggtattgggcctaagtaaatgagtcaaagatccttttggccggtccaga 13861641  T
Q  107 aca 109  Q
    |||    
T  13861642 aca 13861644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 8 - 109
Target Start/End: Complemental strand, 16396237 - 16396135
Alignment:
Q  8 aagggttgtgtcgcgggtaatttagccaaacgtggtgtttgggctttggatgatattgggcct-agtgaatgggtcaaagattcttttggccggtccaga 106  Q
    ||||| ||||||||  |||| || |||||||||||||||| ||||||||||  |||||||||| ||| |||||| ||||||| |||||||||||||||||    
T  16396237 aaggggtgtgtcgcaagtaactttgccaaacgtggtgttttggctttggattgtattgggcctaagtaaatgggccaaagatccttttggccggtccaga 16396138  T
Q  107 aca 109  Q
    |||    
T  16396137 aca 16396135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 8 - 109
Target Start/End: Complemental strand, 18284586 - 18284484
Alignment:
Q  8 aagggttgtgtcgcgggtaatttagccaaacgtggtgtttgggctttggatgatattgggcct-agtgaatgggtcaaagattcttttggccggtccaga 106  Q
    ||||| ||||||| | ||||||| |||||||||| ||||||||||||||||| |||||||||| | | |||||| ||||||| ||||||||||||||| |    
T  18284586 aaggggtgtgtcgtgagtaattttgccaaacgtgatgtttgggctttggatggtattgggcctaattaaatgggccaaagatccttttggccggtccata 18284487  T
Q  107 aca 109  Q
    |||    
T  18284486 aca 18284484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 14 - 110
Target Start/End: Original strand, 25239929 - 25240026
Alignment:
Q  14 tgtgtcgcgggtaatttagccaaacgtggtgtttgggctttggatgatattgggcct-agtgaatgggtcaaagattcttttggccggtccagaacaa 110  Q
    ||||||||| ||||||| | |||||||||||||| |||||||||   |||||||||| ||| |||||| ||||||| |||||||||||||||||||||    
T  25239929 tgtgtcgcgagtaattttgtcaaacgtggtgtttaggctttggagtgtattgggcctaagtaaatgggccaaagatccttttggccggtccagaacaa 25240026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 35 - 109
Target Start/End: Original strand, 8082300 - 8082375
Alignment:
Q  35 aaacgtggtgtttgggctttggatgatattgggcct-agtgaatgggtcaaagattcttttggccggtccagaaca 109  Q
    ||||||||||||||||||||||||  |||||||||| |||||||||| | ||||| ||||||| ||||||||||||    
T  8082300 aaacgtggtgtttgggctttggattgtattgggcctaagtgaatgggcctaagatccttttggacggtccagaaca 8082375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 8 - 109
Target Start/End: Original strand, 45313374 - 45313476
Alignment:
Q  8 aagggttgtgtcgcgggtaatttagccaaacgtggtgtttgggctttggatgatattgggccta-gtgaatgggtcaaagattcttttggccggtccaga 106  Q
    ||||| ||||||||  ||||| | ||||||| ||||| |||||||||| ||  ||||||||||| || |||||||||||| | |||||||||||||||||    
T  45313374 aaggggtgtgtcgcaagtaatgttgccaaacatggtgcttgggctttgaattgtattgggcctaagtaaatgggtcaaagttccttttggccggtccaga 45313473  T
Q  107 aca 109  Q
    |||    
T  45313474 aca 45313476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 32 - 111
Target Start/End: Original strand, 12885532 - 12885612
Alignment:
Q  32 gccaaacgtggtgtttgggctttggatgatattgggcct-agtgaatgggtcaaagattcttttggccggtccagaacaag 111  Q
    ||||||||||||||||||| |||||||  |||||||||| ||| |||||||||||  | ||||||||||||||| ||||||    
T  12885532 gccaaacgtggtgtttgggttttggattgtattgggcctaagtaaatgggtcaaaagtccttttggccggtccaaaacaag 12885612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 32 - 110
Target Start/End: Complemental strand, 26780762 - 26780683
Alignment:
Q  32 gccaaacgtggtgtttgggctttggatgatattgggccta-gtgaatgggtcaaagattcttttggccggtccagaacaa 110  Q
    |||||||||||||||||||||||| ||  ||||||||||| || |||||| ||||  | |||||||||||||||||||||    
T  26780762 gccaaacgtggtgtttgggctttgaatagtattgggcctatgtaaatgggccaaaactccttttggccggtccagaacaa 26780683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 32 - 111
Target Start/End: Complemental strand, 10985661 - 10985581
Alignment:
Q  32 gccaaacgtggtgtttgggctttggatgatattgggcct-agtgaatgggtcaaagattcttttggccggtccagaacaag 111  Q
    |||||||||||||||||  ||||||||  |||||||||| ||| |||||| ||||| | |||||| |||||||||||||||    
T  10985661 gccaaacgtggtgtttgacctttggattgtattgggcctaagtaaatgggccaaaggtccttttgcccggtccagaacaag 10985581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 8 - 57
Target Start/End: Complemental strand, 17282461 - 17282412
Alignment:
Q  8 aagggttgtgtcgcgggtaatttagccaaacgtggtgtttgggctttgga 57  Q
    ||||| ||||||||| ||||||| |||||||||||||| |||||||||||    
T  17282461 aaggggtgtgtcgcgagtaattttgccaaacgtggtgtctgggctttgga 17282412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 199 - 230
Target Start/End: Original strand, 10491356 - 10491387
Alignment:
Q  199 ctttagttataggtttgtgttttgatgatgtc 230  Q
    ||||||||||||||||||||||||||||||||    
T  10491356 ctttagttataggtttgtgttttgatgatgtc 10491387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 55; Significance: 1e-22; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 8 - 109
Target Start/End: Original strand, 27347397 - 27347499
Alignment:
Q  8 aagggttgtgtcgcgggtaatttagccaaacgtggtgtttgggctttggatgatattgggcct-agtgaatgggtcaaagattcttttggccggtccaga 106  Q
    ||||| ||||||||| ||||||| |||||||||| ||||||||||||||||| |||||||| | ||| |||||| ||||||| |||||| ||||||||||    
T  27347397 aaggggtgtgtcgcgagtaattttgccaaacgtgatgtttgggctttggatggtattgggcttaagtaaatgggccaaagatccttttgaccggtccaga 27347496  T
Q  107 aca 109  Q
    |||    
T  27347497 aca 27347499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 8 - 109
Target Start/End: Complemental strand, 25133895 - 25133793
Alignment:
Q  8 aagggttgtgtcgcgggtaatttagccaaacgtggtgtttgggctttggatgatattgggcct-agtgaatgggtcaaagattcttttggccggtccaga 106  Q
    ||||| ||||||||  |||| || |||||||||||||||||||||||||||  || ||||||| ||| ||||||||||||||  |||||||| |||||||    
T  25133895 aaggggtgtgtcgcaagtaactttgccaaacgtggtgtttgggctttggattgtaatgggcctaagtaaatgggtcaaagatctttttggcccgtccaga 25133796  T
Q  107 aca 109  Q
    |||    
T  25133795 aca 25133793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 32 - 109
Target Start/End: Original strand, 3770513 - 3770591
Alignment:
Q  32 gccaaacgtggtgtttgggctttggatgatattgggcct-agtgaatgggtcaaagattcttttggccggtccagaaca 109  Q
    |||||||||||||||||||||||| ||  |||||||||| ||| |||||| ||||| | ||||||||||||||||||||    
T  3770513 gccaaacgtggtgtttgggctttgaattgtattgggcctaagtaaatgggccaaaggtccttttggccggtccagaaca 3770591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 33 - 109
Target Start/End: Complemental strand, 23755764 - 23755687
Alignment:
Q  33 ccaaacgtggtgtttgggctttggatgatattgggccta-gtgaatgggtcaaagattcttttggccggtccagaaca 109  Q
    |||||| |||||||||||||||||||  ||||||||||| || |||||| ||||| | ||||||||||||||||||||    
T  23755764 ccaaacatggtgtttgggctttggattgtattgggcctaggtaaatgggccaaaggtccttttggccggtccagaaca 23755687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 8 - 109
Target Start/End: Original strand, 23932908 - 23933010
Alignment:
Q  8 aagggttgtgtcgcgggtaatttagccaaacgtggtgtttgggctttggatgatattgggcct-agtgaatgggtcaaagattcttttggccggtccaga 106  Q
    ||||| ||||||||  ||||| | | || ||||||||||||||||||||||  |||| ||||| ||| |||||| ||||||| ||||||||||||| |||    
T  23932908 aaggggtgtgtcgcaagtaatgttgtcagacgtggtgtttgggctttggattgtattaggcctaagtaaatgggccaaagatccttttggccggtctaga 23933007  T
Q  107 aca 109  Q
    |||    
T  23933008 aca 23933010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 32 - 110
Target Start/End: Complemental strand, 41266143 - 41266064
Alignment:
Q  32 gccaaacgtggtgtttgggctttggatgatattgggccta-gtgaatgggtcaaagattcttttggccggtccagaacaa 110  Q
    ||||||| ||||||||||  |||||||  ||||||||||| || |||||||| || || |||||| ||||||||||||||    
T  41266143 gccaaacatggtgtttggattttggatcgtattgggcctaagtaaatgggtctaaaatccttttgaccggtccagaacaa 41266064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 109
Target Start/End: Original strand, 19092949 - 19093051
Alignment:
Q  8 aagggttgtgtcgcgggtaatttagccaaacgtggtgtttgggctttggatgatattgggcct-agtgaatgggtcaaagattcttttggccggtccaga 106  Q
    ||||| ||||||||  ||||| |  |||||| |||||||||||||||| || ||||||||||| ||| ||||| |||||  | |||||| ||| ||||||    
T  19092949 aagggatgtgtcgcaagtaatgttaccaaacatggtgtttgggctttgaataatattgggcctaagtaaatggatcaaatctccttttgtccgatccaga 19093048  T
Q  107 aca 109  Q
    |||    
T  19093049 aca 19093051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 34 - 110
Target Start/End: Original strand, 3105459 - 3105536
Alignment:
Q  34 caaacgtggtgtttgggctttggatgatattgggcct-agtgaatgggtcaaagattcttttggccggtccagaacaa 110  Q
    |||||||||||||||||||||||||  | |||||||| ||| |||||   |||| | ||||||||| |||||||||||    
T  3105459 caaacgtggtgtttgggctttggattgtgttgggcctaagtaaatggactaaaggtccttttggccagtccagaacaa 3105536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 47; Significance: 6e-18; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 16 - 109
Target Start/End: Original strand, 25820953 - 25821047
Alignment:
Q  16 tgtcgcgggtaatttagccaaacgtggtgtttgggctttggatgatatt-gggcctagtgaatgggtcaaagattcttttggccggtccagaaca 109  Q
    ||||||| ||||||| |||||||||||||||||||||||||||| |||| || || | | ||| || ||||||| ||||||||||||||||||||    
T  25820953 tgtcgcgagtaattttgccaaacgtggtgtttgggctttggatggtattcggcccaaataaattggccaaagatccttttggccggtccagaaca 25821047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 8 - 107
Target Start/End: Original strand, 11709609 - 11709709
Alignment:
Q  8 aagggttgtgtcgcgggtaatttagccaaacgtggtgtttgggctttggatgatattgggcct-agtgaatgggtcaaagattcttttggccggtccaga 106  Q
    ||||| ||||||||  ||||| | | |||||||||| ||||||||||||||  |||||||||| ||| |||||| ||||||| |||||||||||||||||    
T  11709609 aaggggtgtgtcgcaagtaatattgtcaaacgtggtatttgggctttggattgtattgggcctaagtaaatgggccaaagatccttttggccggtccaga 11709708  T
Q  107 a 107  Q
    |    
T  11709709 a 11709709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 34 - 117
Target Start/End: Complemental strand, 22609438 - 22609355
Alignment:
Q  34 caaacgtggtgtttgggctttggatgatattgggccta-gtgaatgggtcaaagattcttttggccggtccagaacaagaaccaa 117  Q
    ||||| |||||||||||||||||||| ||||||||||| || ||||| |||||||| ||||||| |||||||||||| |||||||    
T  22609438 caaacatggtgtttgggctttggatg-tattgggcctaagtaaatggatcaaagatccttttggtcggtccagaacaggaaccaa 22609355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 14 - 110
Target Start/End: Complemental strand, 41280773 - 41280676
Alignment:
Q  14 tgtgtcgcgggtaatttagccaaacgtggtgtttgggctttggatgatattgggcct-agtgaatgggtcaaagattcttttggccggtccagaacaa 110  Q
    ||||||||  ||||| | ||||||| |||||||||||||||||||  | |||||||| ||| |||||||||||| | |||||| ||||||||||||||    
T  41280773 tgtgtcgcaagtaatgttgccaaacatggtgtttgggctttggattgtgttgggcctaagtaaatgggtcaaaggtccttttgtccggtccagaacaa 41280676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 34 - 108
Target Start/End: Complemental strand, 32008959 - 32008884
Alignment:
Q  34 caaacgtggtgtttgggctttggatgatattgggcct-agtgaatgggtcaaagattcttttggccggtccagaac 108  Q
    ||||||||||||||||||||| |||  |||||||||| |||  ||||||||||| | |||||||||||||||||||    
T  32008959 caaacgtggtgtttgggctttcgattgtattgggcctaagtatatgggtcaaaggtccttttggccggtccagaac 32008884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 32 - 109
Target Start/End: Complemental strand, 7454599 - 7454521
Alignment:
Q  32 gccaaacgtggtgtttgggctttggatgatattgggccta-gtgaatgggtcaaagattcttttggccggtccagaaca 109  Q
    ||||||||||| |||||||||||||||  | ||||||||| || ||| || ||||||| ||||||||||||||||||||    
T  7454599 gccaaacgtggagtttgggctttggattgtgttgggcctaagtaaataggccaaagatccttttggccggtccagaaca 7454521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 40 - 110
Target Start/End: Complemental strand, 18040426 - 18040356
Alignment:
Q  40 tggtgtttgggctttggatgatattgggcctagtgaatgggtcaaagattcttttggccggtccagaacaa 110  Q
    ||||||||||||||||||| ||||||| |  ||| |||||| ||||| | |||||||||||||||||||||    
T  18040426 tggtgtttgggctttggattatattggcctaagtaaatgggccaaaggtccttttggccggtccagaacaa 18040356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 32 - 109
Target Start/End: Complemental strand, 33273469 - 33273391
Alignment:
Q  32 gccaaacgtggtgtttgggctttggatgatattgggcct-agtgaatgggtcaaagattcttttggccggtccagaaca 109  Q
    |||||||||||||||||||||||||||  |||| ||||| ||| |||||| ||||||| ||||||| ||||||| ||||    
T  33273469 gccaaacgtggtgtttgggctttggatagtattaggcctaagtaaatgggccaaagatccttttggtcggtccataaca 33273391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 8 - 110
Target Start/End: Original strand, 7999877 - 7999980
Alignment:
Q  8 aagggttgtgtcgcgggtaatttagccaaacgtggtgtttgggctttggatgatattgggcct-agtgaatgggtcaaagattcttttggccggtccaga 106  Q
    ||||| ||||||||  ||||||| |||||||| |||||| ||| | |||||  |||||||||| ||| |||||| ||||  | |||||||||||||||||    
T  7999877 aaggggtgtgtcgcaagtaattttgccaaacgcggtgttcgggttgtggattgtattgggcctaagtaaatgggccaaatgtccttttggccggtccaga 7999976  T
Q  107 acaa 110  Q
    ||||    
T  7999977 acaa 7999980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 8 - 106
Target Start/End: Complemental strand, 18573988 - 18573889
Alignment:
Q  8 aagggttgtgtcgcgggtaatttagccaaacgtggtgtttgggctttggatgatattgggcct-agtgaatgggtcaaagattcttttggccggtccaga 106  Q
    ||||| ||||||||  |||| || |||||||||||||||||||||||| ||  |||| ||||| ||| |||||  |||| || |||||||||||||||||    
T  18573988 aagggatgtgtcgcaagtaactttgccaaacgtggtgtttgggctttgcattgtattaggcctaagtaaatggaccaaaaatccttttggccggtccaga 18573889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 200 - 229
Target Start/End: Original strand, 22739948 - 22739977
Alignment:
Q  200 tttagttataggtttgtgttttgatgatgt 229  Q
    ||||||||||||||||||||||||||||||    
T  22739948 tttagttataggtttgtgttttgatgatgt 22739977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 72
Target Start/End: Original strand, 17775848 - 17775912
Alignment:
Q  8 aagggttgtgtcgcgggtaatttagccaaacgtggtgtttgggctttggatgatattgggcctag 72  Q
    ||||| ||||||||  |||| || |||||||||| ||||||||||||||||  |||||| |||||    
T  17775848 aaggggtgtgtcgcaagtaactttgccaaacgtgatgtttgggctttggattgtattggacctag 17775912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0362 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: scaffold0362
Description:

Target: scaffold0362; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 14 - 110
Target Start/End: Complemental strand, 7314 - 7217
Alignment:
Q  14 tgtgtcgcgggtaatttagccaaacgtggtgtttgggctttggatgatattgggcct-agtgaatgggtcaaagattcttttggccggtccagaacaa 110  Q
    ||||||||| ||||||| ||||||| ||||||||||||||||||||||||||| | | | | |||||| ||||||| ||||| ||||||||| |||||    
T  7314 tgtgtcgcgagtaattttgccaaacttggtgtttgggctttggatgatattggacataaataaatgggccaaagatccttttagccggtccaaaacaa 7217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1272 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: scaffold1272
Description:

Target: scaffold1272; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 8 - 110
Target Start/End: Original strand, 1972 - 2075
Alignment:
Q  8 aagggttgtgtcgcgggtaatttagccaaacgtggtgtttgggctttggatgatattgg-gcctagtgaatgggtcaaagattcttttggccggtccaga 106  Q
    ||||| ||||||||  ||||||| |||||||||||||||||||||||| ||  ||||||  || ||| |||||| ||||  | |||||||||||||||||    
T  1972 aaggggtgtgtcgcaagtaattttgccaaacgtggtgtttgggctttgaatagtattggacccaagtaaatgggccaaaactccttttggccggtccaga 2071  T
Q  107 acaa 110  Q
    ||||    
T  2072 acaa 2075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0026 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0026
Description:

Target: scaffold0026; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 32 - 105
Target Start/End: Complemental strand, 151238 - 151164
Alignment:
Q  32 gccaaacgtggtgtttgggctttggatgatattgggcct-agtgaatgggtcaaagattcttttggccggtccag 105  Q
    ||||||||| |||||||||||||||||  |||| ||||| ||| |||||| ||||||| ||||||||||||||||    
T  151238 gccaaacgtagtgtttgggctttggattgtattaggcctaagtaaatgggccaaagatccttttggccggtccag 151164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 2)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 8 - 109
Target Start/End: Original strand, 253542 - 253644
Alignment:
Q  8 aagggttgtgtcgcgggtaatttagccaaacgtggtgtttgggctttggatgatattgggcct-agtgaatgggtcaaagattcttttggccggtccaga 106  Q
    ||||| ||||||||  ||||| | ||||||||||||||||||| |||||||  |||||||||| ||  |||||| ||||| ||||||||||| ||||| |    
T  253542 aaggggtgtgtcgcacgtaatgttgccaaacgtggtgtttgggatttggattgtattgggcctaagaaaatgggccaaaggttcttttggcctgtccaaa 253641  T
Q  107 aca 109  Q
    |||    
T  253642 aca 253644  T

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Target: scaffold0008; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 8 - 107
Target Start/End: Original strand, 242902 - 243002
Alignment:
Q  8 aagggttgtgtcgcgggtaatttagccaaacgtggtgtttgggctttggatgatattgggcct-agtgaatgggtcaaagattcttttggccggtccaga 106  Q
    ||||| ||||||||  ||||| | ||||||| ||||||||||||||| |||  |||||||||| ||| |||||| ||||| | |||||||||||| ||||    
T  242902 aaggggtgtgtcgcaagtaatgttgccaaacttggtgtttgggctttagattgtattgggcctaagtaaatgggacaaaggtccttttggccggtacaga 243001  T
Q  107 a 107  Q
    |    
T  243002 a 243002  T

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Target: scaffold0192 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0192
Description:

Target: scaffold0192; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 14 - 110
Target Start/End: Original strand, 12555 - 12652
Alignment:
Q  14 tgtgtcgcgggtaatttagccaaacgtggtgtttgggctttggatgatattgggccta-gtgaatgggtcaaagattcttttggccggtccagaacaa 110  Q
    ||||||||  ||||| | || ||||||||||||||||||||| ||  |||| |||||| || |||||| ||||| | |||||||||||||||||||||    
T  12555 tgtgtcgcaagtaatgttgcaaaacgtggtgtttgggctttgaattgtattaggcctaagtaaatgggccaaagctccttttggccggtccagaacaa 12652  T

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Target: scaffold0084 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0084
Description:

Target: scaffold0084; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 9 - 109
Target Start/End: Complemental strand, 54574 - 54473
Alignment:
Q  9 agggttgtgtcgcgggtaatttagccaaacgtggtgtttgggctttggatgatattgggccta-gtgaatgggtcaaagattcttttggccggtccagaa 107  Q
    |||| |||||| || ||||||| |||||||||||  ||||||||||| |   ||||||| ||| || |||||| ||||||| ||||||||||||||||||    
T  54574 aggggtgtgtctcgagtaattttgccaaacgtggattttgggctttgtagtgtattgggtctaagtaaatgggccaaagatccttttggccggtccagaa 54475  T
Q  108 ca 109  Q
    ||    
T  54474 ca 54473  T

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Target: scaffold0034 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 8 - 107
Target Start/End: Complemental strand, 56329 - 56229
Alignment:
Q  8 aagggttgtgtcgcgggtaatttagccaaacgtggtgtttgggctttggatgatattgggcct-agtgaatgggtcaaagattcttttggccggtccaga 106  Q
    ||||| ||||||||  |||| || |||||||||||||||||||||||||||  |||||||||| ||| |||||| ||||| | ||||| | | |||||||    
T  56329 aaggggtgtgtcgcaagtaacttcgccaaacgtggtgtttgggctttggattgtattgggcctaagtaaatgggccaaaggtcctttttgtcagtccaga 56230  T
Q  107 a 107  Q
    |    
T  56229 a 56229  T

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Target: scaffold0280 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0280
Description:

Target: scaffold0280; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 35 - 109
Target Start/End: Complemental strand, 984 - 909
Alignment:
Q  35 aaacgtggtgtttgggctttggatgatattgggcct-agtgaatgggtcaaagattcttttggccggtccagaaca 109  Q
    ||||||||||||||||||||||||  |||||| ||| ||| |||||| ||||| | |||||| |||||||||||||    
T  984 aaacgtggtgtttgggctttggattgtattggacctaagtaaatgggccaaaggtccttttgaccggtccagaaca 909  T

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Target: scaffold0150 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0150
Description:

Target: scaffold0150; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 32 - 109
Target Start/End: Complemental strand, 30004 - 29926
Alignment:
Q  32 gccaaacgtggtgtttgggctttggatgatattgggcct-agtgaatgggtcaaagattcttttggccggtccagaaca 109  Q
    |||||||||| ||||||||||||||||  | |||||||| | | |||||| ||||| | ||||||||||||||||||||    
T  30004 gccaaacgtgctgtttgggctttggattgtgttgggcctaattaaatgggccaaaggtccttttggccggtccagaaca 29926  T

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Target: scaffold0042 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0042
Description:

Target: scaffold0042; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 8 - 109
Target Start/End: Original strand, 68902 - 69004
Alignment:
Q  8 aagggttgtgtcgcgggtaatttagccaaacgtggtgtttgggctttggatgatattgggccta-gtgaatgggtcaaagattcttttggccggtccaga 106  Q
    ||||| ||||||||  ||||| | || |||||||| || ||||||||| ||  ||||||||||| || |||||| ||||||| |||||||||||| ||||    
T  68902 aaggggtgtgtcgcaagtaatgttgcaaaacgtggagtctgggctttgaattgtattgggcctaagtaaatgggccaaagatccttttggccggttcaga 69001  T
Q  107 aca 109  Q
    |||    
T  69002 aca 69004  T

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Target: chr3 (Bit Score: 35; Significance: 0.00000000008; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 75 - 109
Target Start/End: Complemental strand, 31530522 - 31530488
Alignment:
Q  75 aatgggtcaaagattcttttggccggtccagaaca 109  Q
    |||||||||||||||||||||||||||||||||||    
T  31530522 aatgggtcaaagattcttttggccggtccagaaca 31530488  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 200 - 230
Target Start/End: Complemental strand, 42369964 - 42369934
Alignment:
Q  200 tttagttataggtttgtgttttgatgatgtc 230  Q
    |||||||||||||||||||||||||||||||    
T  42369964 tttagttataggtttgtgttttgatgatgtc 42369934  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 41 - 109
Target Start/End: Original strand, 19790537 - 19790606
Alignment:
Q  41 ggtgtttgggctttggatgatattgggcct-agtgaatgggtcaaagattcttttggccggtccagaaca 109  Q
    |||||||||| |||||||| |||||||||| ||| |||||| ||| ||| ||||||||| ||||| ||||    
T  19790537 ggtgtttgggttttggatggtattgggcctaagtaaatgggccaatgatccttttggccagtccataaca 19790606  T

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Target: scaffold1121 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold1121
Description:

Target: scaffold1121; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 199 - 230
Target Start/End: Original strand, 378 - 409
Alignment:
Q  199 ctttagttataggtttgtgttttgatgatgtc 230  Q
    ||||||||||||||||||||||||||||||||    
T  378 ctttagttataggtttgtgttttgatgatgtc 409  T

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Target: scaffold0483 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0483
Description:

Target: scaffold0483; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 8 - 55
Target Start/End: Original strand, 9359 - 9406
Alignment:
Q  8 aagggttgtgtcgcgggtaatttagccaaacgtggtgtttgggctttg 55  Q
    ||||| ||||||||  ||||||| ||||||||||||||||||||||||    
T  9359 aaggggtgtgtcgcaagtaattttgccaaacgtggtgtttgggctttg 9406  T

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Target: scaffold0989 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0989
Description:

Target: scaffold0989; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 58
Target Start/End: Complemental strand, 1494 - 1444
Alignment:
Q  8 aagggttgtgtcgcgggtaatttagccaaacgtggtgtttgggctttggat 58  Q
    ||||| ||||||||  |||| || |||||||||||||||||||||||||||    
T  1494 aagggatgtgtcgcaagtaacttcgccaaacgtggtgtttgggctttggat 1444  T

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Target: scaffold0083 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0083
Description:

Target: scaffold0083; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 32 - 109
Target Start/End: Complemental strand, 4143 - 4065
Alignment:
Q  32 gccaaacgtggtgtttgggctttggatgatattgggcct-agtgaatgggtcaaagattcttttggccggtccagaaca 109  Q
    |||||||||||||||||| ||||||||  |||| | ||| ||| |||| | |||| || ||||||||||||||||||||    
T  4143 gccaaacgtggtgtttggactttggattgtatttgacctaagtaaatgagccaaatatccttttggccggtccagaaca 4065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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