View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3308_low_75 (Length: 233)
Name: NF3308_low_75
Description: NF3308
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3308_low_75 |
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Alignment Details
Target: chr8 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 232
Target Start/End: Original strand, 8151052 - 8151285
Alignment:
| Q |
1 |
aacaagactgctaaagcagtgagttagcaacatcgtctcaaaaggacagaaccgcaagnnnnnnnnn--catgaaaaccaccggaaacaacaactcctaa |
98 |
Q |
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| T |
8151052 |
aacaagactgctaaagcagtgagttagcaacatcgtctcaaaaggacagaaccgcaagaaaaaaaaaaacatgaaaaccaccggaaacaacaactcctaa |
8151151 |
T |
|
| Q |
99 |
acaaccaccaattgaattgcaaaataataacacggctatattttaccaagacaagaataagcatagctgaaaagaaattttagagtacagaaacgtacca |
198 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
8151152 |
acaaccaccaattgaattgcaaaataataacactgctatattttaccaagacaagaataagcgtagctgaaaagaaattttagagtacagaaacgtacca |
8151251 |
T |
|
| Q |
199 |
aattggaaaaccttttctcgttttttctttgttt |
232 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
8151252 |
aattggaaaaccttttctcgttttttctttgttt |
8151285 |
T |
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