View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3308_low_78 (Length: 229)
Name: NF3308_low_78
Description: NF3308
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3308_low_78 |
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Alignment Details
Target: chr3 (Bit Score: 170; Significance: 2e-91; HSPs: 8)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 32 - 228
Target Start/End: Original strand, 23360265 - 23360462
Alignment:
| Q |
32 |
ttatacacgcacacgaaggaaaagaagaatctaagcatttgcacaaataggaatgactctcatccattatatacaatctcaaagtgttcttgcatcaatt |
131 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||| ||||||||||||||||||||||| |
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| T |
23360265 |
ttatacacgcacacgaaggaaaagaagaatctaagcatttgcacaaataggagtgactctcatccaatatatacaaactcaaagtgttcttgcatcaatt |
23360364 |
T |
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| Q |
132 |
tatcctatgtgcacaacattttatttatcattaaatataacatgaaagtttaagaac-ttttgttaccttgaattcttacaccactggctagcttcaa |
228 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
23360365 |
tatcctatgtgcacaacattttatttatcaagaaatataacatgaaagtttaagaactttttgttaccttgaattcttacaccactggctagcttcaa |
23360462 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 36 - 228
Target Start/End: Original strand, 23365090 - 23365283
Alignment:
| Q |
36 |
acacgcacacgaaggaaaagaagaatctaagcatttgcacaaataggaatgactctcatccattatatacaatctcaaagtgttcttgcatcaatttatc |
135 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23365090 |
acacgcacacgaaggaaaagaagaatcaaagcatttgcacaaataggagtgactctcatccattatatacaatctcaaagtgttcttgcatcaatttatc |
23365189 |
T |
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| Q |
136 |
ctatgtgcacaacattttatttatcattaaatataacatgaaagtttaagaac-ttttgttaccttgaattcttacaccactggctagcttcaa |
228 |
Q |
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| T |
23365190 |
ctatgtgcacaacattttatttatcaagaaatataacatgaaagtttaagaactttttgttaccttgaattcttacaccactggctagcttcaa |
23365283 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 36 - 228
Target Start/End: Original strand, 23695568 - 23695761
Alignment:
| Q |
36 |
acacgcacacgaaggaaaagaagaatctaagcatttgcacaaataggaatgactctcatccattatatacaatctcaaagtgttcttgcatcaatttatc |
135 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23695568 |
acacgcacacgaaggaaaagaagaatcaaagcatttgcacaaataggagtgactctcatccattatatacaatctcaaagtgttcttgcatcaatttatc |
23695667 |
T |
|
| Q |
136 |
ctatgtgcacaacattttatttatcattaaatataacatgaaagtttaagaac-ttttgttaccttgaattcttacaccactggctagcttcaa |
228 |
Q |
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| T |
23695668 |
ctatgtgcacaacattttatttatcaagaaatataacatgaaagtttaagaactttttgttaccttgaattcttacaccactggctagcttcaa |
23695761 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 36 - 228
Target Start/End: Original strand, 23714008 - 23714201
Alignment:
| Q |
36 |
acacgcacacgaaggaaaagaagaatctaagcatttgcacaaataggaatgactctcatccattatatacaatctcaaagtgttcttgcatcaatttatc |
135 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23714008 |
acacgcacacgaaggaaaagaagaatcaaagcatttgcacaaataggagtgactctcatccattatatacaatctcaaagtgttcttgcatcaatttatc |
23714107 |
T |
|
| Q |
136 |
ctatgtgcacaacattttatttatcattaaatataacatgaaagtttaagaac-ttttgttaccttgaattcttacaccactggctagcttcaa |
228 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
23714108 |
ctatgtgcacaacattttatttatcaagaaatataacatgaaagtttaagaactttttgttaccttgaattcttacaccactggctagcttcaa |
23714201 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 36 - 228
Target Start/End: Original strand, 23732464 - 23732657
Alignment:
| Q |
36 |
acacgcacacgaaggaaaagaagaatctaagcatttgcacaaataggaatgactctcatccattatatacaatctcaaagtgttcttgcatcaatttatc |
135 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23732464 |
acacgcacacgaaggaaaagaagaatcaaagcatttgcacaaataggagtgactctcatccattatatacaatctcaaagtgttcttgcatcaatttatc |
23732563 |
T |
|
| Q |
136 |
ctatgtgcacaacattttatttatcattaaatataacatgaaagtttaagaac-ttttgttaccttgaattcttacaccactggctagcttcaa |
228 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
23732564 |
ctatgtgcacaacattttatttatcaagaaatataacatgaaagtttaagaactttttgttaccttgaattcttacaccactggctagcttcaa |
23732657 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 36 - 228
Target Start/End: Original strand, 23750919 - 23751112
Alignment:
| Q |
36 |
acacgcacacgaaggaaaagaagaatctaagcatttgcacaaataggaatgactctcatccattatatacaatctcaaagtgttcttgcatcaatttatc |
135 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23750919 |
acacgcacacgaaggaaaagaagaatcaaagcatttgcacaaataggagtgactctcatccattatatacaatctcaaagtgttcttgcatcaatttatc |
23751018 |
T |
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| Q |
136 |
ctatgtgcacaacattttatttatcattaaatataacatgaaagtttaagaac-ttttgttaccttgaattcttacaccactggctagcttcaa |
228 |
Q |
| |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
23751019 |
ctatgtgcacaacattttatttatcaagaaatataacatgaaagtttaagaactttttgttaccttgaattcttacaccactggctagcttcaa |
23751112 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 85 - 228
Target Start/End: Complemental strand, 24101293 - 24101149
Alignment:
| Q |
85 |
tgactctcatccattatatacaatctcaaagtgttcttgcatcaatttatcctatgt--gcacaacattttatttatcattaaatataacatgaaagttt |
182 |
Q |
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||||||||||||| || || ||| |||||||| ||||||||||||||||| ||| | |||||||||||||||||||| |||| ||||||| || ||| |
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| T |
24101293 |
tgactctcatccagtaaatgcaagctcaaagt--tcttgcatcaatttatcatatatatgcacaacattttatttatcaagaaatctaacatgtaatttt |
24101196 |
T |
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| Q |
183 |
aagaac-ttttgttaccttgaattcttacaccactggctagcttcaa |
228 |
Q |
| |
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|||||| |||| |||||||||||||| || ||||||||||||||||| |
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| T |
24101195 |
aagaactttttattaccttgaattctcactccactggctagcttcaa |
24101149 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 75 - 210
Target Start/End: Complemental strand, 24105456 - 24105321
Alignment:
| Q |
75 |
caaataggaatgactctcatccattatatacaatctcaaagtgtt-cttgcatcaatttatcctatgtgcacaacattttatttatcattaaatataaca |
173 |
Q |
| |
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|||| ||||||||||||||||||| |||| ||||| ||| |||| ||| |||||||| |||| | ||||||||||||||| ||||| |||| ||||| |
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| T |
24105456 |
caaacaggaatgactctcatccatcatatgaaatct-aaactgtttctttcatcaattcatccaacgtgcacaacatttta-ttatcgagaaatgtaaca |
24105359 |
T |
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| Q |
174 |
tgaaagtttaagaac-ttttgttaccttgaattcttac |
210 |
Q |
| |
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|||||||||| ||| |||| ||||||||||||||||| |
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| T |
24105358 |
tgaaagtttagaaactttttattaccttgaattcttac |
24105321 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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