View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3308_low_8 (Length: 546)
Name: NF3308_low_8
Description: NF3308
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3308_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 401; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 401; E-Value: 0
Query Start/End: Original strand, 18 - 542
Target Start/End: Complemental strand, 812882 - 812361
Alignment:
| Q |
18 |
aatggggtggtgcggttgtgtagagattgtttataattgactttcttagtaattcaaatttgnnnnnnngtgtacttatggggtattatattgtattgtt |
117 |
Q |
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| T |
812882 |
aatggggtggtgcggttgtgcagagattgtttataattgactttcttagtaattcaattttttttttttgtgtacttatggggtattgtattgtattgtt |
812783 |
T |
|
| Q |
118 |
ttgttttcatgagacatgctttaaaatgtattatgagatgtatgtaaaatttaattaattgtgcttcttaataagtagcagccctttagttgcaacggaa |
217 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
812782 |
ttgttttcatgagatatgctttaaaatgtattatgagatgtatgtaaaatttaattaattgtgcttcttaataagtagcagccctttagttgcaacggaa |
812683 |
T |
|
| Q |
218 |
gagcttgcttggatgcacaaaccagctaagataataatattccactagcaagagtgctcaggatatatagggctatgtgtgatgtgatgtagagttccaa |
317 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | | || |||||||||||||||||| |
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| T |
812682 |
gagcttgtttggatgcacaaaccagctaagataataatattccactagcaagagtgctcaggatatatatatagttctatg-tgtgatgtagagttccaa |
812584 |
T |
|
| Q |
318 |
actactttacattgtaattaactttaatcgataatttgagattagactgttaagattacacatcagttttagtgaagctgtatgatctcagccgttaaac |
417 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
812583 |
actactttacattgtaattaattttaatcgataatttgagattagactgttaagattacacatcaattttagtgaagctgtatgatctcagccgttaaac |
812484 |
T |
|
| Q |
418 |
caaatcggacagttgagagtagtaaatgtgccacacaagttaatgcaccaactccaaattcattgcggattctcttagtttgtgatataaactaatattt |
517 |
Q |
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| T |
812483 |
caaatcggacagttgagagaagtaaatgtgccacacaagttaatgcaccaactccaaattcattgtggattctcttagtttgtgaaataaa--actattt |
812386 |
T |
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| Q |
518 |
catttcattttatattcatctcact |
542 |
Q |
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||||||||||||||||||| ||||| |
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| T |
812385 |
catttcattttatattcatttcact |
812361 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 139 - 187
Target Start/End: Original strand, 14306468 - 14306516
Alignment:
| Q |
139 |
taaaatgtattatgagatgtatgtaaaatttaattaattgtgcttctta |
187 |
Q |
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| T |
14306468 |
taaaatgtattatgagatggatatgaaatttaatcaattgtgcttctta |
14306516 |
T |
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