View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3309_high_16 (Length: 273)
Name: NF3309_high_16
Description: NF3309
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3309_high_16 |
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Alignment Details
Target: chr1 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 13 - 257
Target Start/End: Complemental strand, 44859675 - 44859431
Alignment:
| Q |
13 |
aatatacaaccaaagggtaagaattaagatattacagcacaagagaggtaatatacattgaagtcttgtaaaaatatgttagcaaagcgtagtttagaaa |
112 |
Q |
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| T |
44859675 |
aatatacaaccaaagggtaagaattaagatattacagcacaagagaggtaatatacattgaagtcttgtaaaaatatgttagcaaagcgtagtttagaaa |
44859576 |
T |
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| Q |
113 |
taaaaatctaaactaacagggcactcctggagaggttggctaagatatgatgttgctgaagttcagtgaggttacctttgatccattcgaatagccccgg |
212 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
44859575 |
taaaaatataaactaacagggcactcctggagaggttggctaagatatgatgttgctgaagttcagtgaggttaccttcgatccattcgaatagccccgg |
44859476 |
T |
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| Q |
213 |
ataatcaactctggatcctggcccataaaaatgtaatgaaaaatt |
257 |
Q |
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| T |
44859475 |
ataatcaactctggatcctggcccataaaaatgtaatgaaaaatt |
44859431 |
T |
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