View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3309_high_17 (Length: 256)
Name: NF3309_high_17
Description: NF3309
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3309_high_17 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 212; Significance: 1e-116; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 19 - 254
Target Start/End: Complemental strand, 2531947 - 2531712
Alignment:
| Q |
19 |
ggaatcatgtatcacaatatgagtggataaagcaatgtcaaacccatcagtattggggctagtaccaggtgaattaatagatatattagaaaatgttgca |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2531947 |
ggaatcatgtatcacaatatgagtggataaagcaatgtcaaacccatcagtattggggctagtaccaggtgaattaatagatatattagaaaatgttgca |
2531848 |
T |
|
| Q |
119 |
ccattgcacatattaacagctacatgggaacgtggactattagtgatcctcaggttactaacattgagacccttgcaggaatgaaacaagaagacctgta |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
2531847 |
ccattgcacatattaacagctacatgggaacgtggactattagtgatactcagattactaacattgagacccttgcatgaatgaaacaagaagacctgta |
2531748 |
T |
|
| Q |
219 |
gcatcaagaaaaatattaatttggtggttgaatcac |
254 |
Q |
| |
|
||||||| ||||||||||||||||| ||| |||||| |
|
|
| T |
2531747 |
gcatcaataaaaatattaatttggtcgttcaatcac |
2531712 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 19 - 254
Target Start/End: Complemental strand, 2541490 - 2541255
Alignment:
| Q |
19 |
ggaatcatgtatcacaatatgagtggataaagcaatgtcaaacccatcagtattggggctagtaccaggtgaattaatagatatattagaaaatgttgca |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2541490 |
ggaatcatgtatcacaatatgagtggataaagcaatgtcaaacccatcagtattggggctagtaccaggtgaattaatagatatattagaaaatgttgca |
2541391 |
T |
|
| Q |
119 |
ccattgcacatattaacagctacatgggaacgtggactattagtgatcctcaggttactaacattgagacccttgcaggaatgaaacaagaagacctgta |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
2541390 |
ccattgcacatattaacagctacatgggaacgtggactattagtgatactcagattactaacattgagacccttgcatgaatgaaacaagaagacctgta |
2541291 |
T |
|
| Q |
219 |
gcatcaagaaaaatattaatttggtggttgaatcac |
254 |
Q |
| |
|
||||||| ||||||||||||||||| ||| |||||| |
|
|
| T |
2541290 |
gcatcaataaaaatattaatttggtcgttcaatcac |
2541255 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 52 - 201
Target Start/End: Complemental strand, 2555365 - 2555216
Alignment:
| Q |
52 |
aatgtcaaacccatcagtattggggctagtaccaggtgaattaatagatatattagaaaatgttgcaccattgcacatattaacagctacatgggaacgt |
151 |
Q |
| |
|
|||||||||||||||||| |||||||||||| ||| |||||||||||||||| ||||||||||| | |||||||||| ||||||| ||||| || | | |
|
|
| T |
2555365 |
aatgtcaaacccatcagtgttggggctagtagcagcagaattaatagatatatgagaaaatgttgaatgattgcacatagtaacagcaacatgagatctt |
2555266 |
T |
|
| Q |
152 |
ggactattagtgatcctcaggttactaacattgagacccttgcaggaatg |
201 |
Q |
| |
|
|| ||||| |||||||| ||| |||||||||||||| ||||||||||| |
|
|
| T |
2555265 |
gggctattcaggatcctcaagtttctaacattgagaccattgcaggaatg |
2555216 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 34 - 204
Target Start/End: Complemental strand, 1830019 - 1829849
Alignment:
| Q |
34 |
aatatgagtggataaagcaatgtcaaacccatcagtattggggctagtaccaggtgaattaatagatatattagaaaatgttgcaccattgcacatatta |
133 |
Q |
| |
|
||||| |||||| |||| |||||||||||||||||| ||||| |||||| |||||||||| || |||| || ||| ||||||| || ||||||||||||| |
|
|
| T |
1830019 |
aatatcagtggaaaaagaaatgtcaaacccatcagtgttgggactagtagcaggtgaattgatggatacatgagagaatgttgtacgattgcacatatta |
1829920 |
T |
|
| Q |
134 |
acagctacatgggaacgtggactattagtgatcctcaggttactaacattgagacccttgcaggaatgaaa |
204 |
Q |
| |
|
| | |||||| |||| || ||||| |||||||| |||||||||||| | ||| | ||||| |||||||| |
|
|
| T |
1829919 |
atggatacatgagaactcgggctattggtgatccttaggttactaacactaagatcgttgcaagaatgaaa |
1829849 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 34 - 204
Target Start/End: Complemental strand, 1864464 - 1864294
Alignment:
| Q |
34 |
aatatgagtggataaagcaatgtcaaacccatcagtattggggctagtaccaggtgaattaatagatatattagaaaatgttgcaccattgcacatatta |
133 |
Q |
| |
|
||||| |||||| |||| |||||||||||||||||| ||||| |||||| |||||||||| || |||| || ||| ||||||| || ||||||||||||| |
|
|
| T |
1864464 |
aatatcagtggaaaaagaaatgtcaaacccatcagtgttgggactagtagcaggtgaattgatggatacatgagagaatgttgtacgattgcacatatta |
1864365 |
T |
|
| Q |
134 |
acagctacatgggaacgtggactattagtgatcctcaggttactaacattgagacccttgcaggaatgaaa |
204 |
Q |
| |
|
| | |||||| |||| || ||||| |||||||| |||||||||||| | ||| | ||||| |||||||| |
|
|
| T |
1864364 |
atggatacatgagaactcgggctattggtgatccttaggttactaacactaagatcgttgcaagaatgaaa |
1864294 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 52 - 201
Target Start/End: Complemental strand, 2565039 - 2564890
Alignment:
| Q |
52 |
aatgtcaaacccatcagtattggggctagtaccaggtgaattaatagatatattagaaaatgttgcaccattgcacatattaacagctacatgggaacgt |
151 |
Q |
| |
|
||||||||| |||||||| |||||||||| | ||| |||||||||||||||| ||||||||||| | ||||||||||||||||| ||||| || | |
|
|
| T |
2565039 |
aatgtcaaatccatcagtgttggggctagcagcagcagaattaatagatatatgagaaaatgttgaatgattgcacatattaacagaaacatgagatttt |
2564940 |
T |
|
| Q |
152 |
ggactattagtgatcctcaggttactaacattgagacccttgcaggaatg |
201 |
Q |
| |
|
|| ||||| |||||||| ||| |||||||||||||| ||||||||||| |
|
|
| T |
2564939 |
gggctattcaagatcctcaagttcctaacattgagaccattgcaggaatg |
2564890 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 56 - 137
Target Start/End: Complemental strand, 2549861 - 2549780
Alignment:
| Q |
56 |
tcaaacccatcagtattggggctagtaccaggtgaattaatagatatattagaaaatgttgcaccattgcacatattaacag |
137 |
Q |
| |
|
|||||||||||||| |||||||||||| |||| ||| |||| ||||||| |||||||||||| ||||||||||||||||| |
|
|
| T |
2549861 |
tcaaacccatcagtgttggggctagtagcaggagaactaatggatatataggaaaatgttgcatgattgcacatattaacag |
2549780 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University