View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3309_high_27 (Length: 226)
Name: NF3309_high_27
Description: NF3309
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3309_high_27 |
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Alignment Details
Target: chr1 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 209
Target Start/End: Original strand, 13948820 - 13949028
Alignment:
| Q |
1 |
acactccaagtaatccatgtgttcagcccatgttccccatttaggccatcaaagccactgtcatgggaagaaagtgtcctccaaatgcaagccaaagaca |
100 |
Q |
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| T |
13948820 |
acactccaagtaatccatgtgttcagcccatgttccccatttaggccatcaaagccactgtcatgggaagaaagtgtcctccaaatgcaagccaaagaca |
13948919 |
T |
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| Q |
101 |
caactagacttcaattccttgatagtttagtagctagaaaatctattgtacctattgcttctggtagacaaatcatacagagtccaacttacattgttag |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13948920 |
caactagacttcaattccttgatagtttagtagctagaaaatctattgtacctattgcttctggtagacaaatcatacagagtccaacttacattgttag |
13949019 |
T |
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| Q |
201 |
ggctaaaat |
209 |
Q |
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||||||||| |
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| T |
13949020 |
ggctaaaat |
13949028 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 177; Significance: 1e-95; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 177; E-Value: 1e-95
Query Start/End: Original strand, 1 - 209
Target Start/End: Complemental strand, 4039121 - 4038914
Alignment:
| Q |
1 |
acactccaagtaatccatgtgttcagcccatgttccccatttaggccatcaaagccactgtcatgggaagaaagtgtcctccaaatgcaagccaaagaca |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
4039121 |
acactccaagtaatccatgtgttcagcccatgttccccatttaggccatcaa-gccactttcatgggaagaaagtgtcctccaaatgcaagccaaagaca |
4039023 |
T |
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| Q |
101 |
caactagacttcaattccttgatagtttagtagctagaaaatctattgtacctattgcttctggtagacaaatcatacagagtccaacttacattgttag |
200 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||| || |
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| T |
4039022 |
caactagacttcaattccttgatagtttggtagctagaaaatcagttgtacctattgcttctggtagacagatcatacagagtccaacttacattgtaag |
4038923 |
T |
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| Q |
201 |
ggctaaaat |
209 |
Q |
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||||||||| |
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| T |
4038922 |
ggctaaaat |
4038914 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 80
Target Start/End: Original strand, 14701773 - 14701852
Alignment:
| Q |
1 |
acactccaagtaatccatgtgttcagcccatgttccccatttaggccatcaaagccactgtcatgggaagaaagtgtcct |
80 |
Q |
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|||||| |||| ||||| | ||||||| |||||| ||||| | |||||||| ||| |||||||||||||||||||||| |
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| T |
14701773 |
acactcaaagtgttccatatcttcagccaatgttctccattcaaaccatcaaaaccaatgtcatgggaagaaagtgtcct |
14701852 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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