View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3309_high_9 (Length: 409)
Name: NF3309_high_9
Description: NF3309
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3309_high_9 |
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Alignment Details
Target: chr5 (Bit Score: 316; Significance: 1e-178; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 24 - 385
Target Start/End: Complemental strand, 19597628 - 19597270
Alignment:
| Q |
24 |
aaactatccgattctaatgcaccaccatcttcatcaaagaaaccactaccttcttcatcagagaaaccaccatcttcactgcagccacatcaatcttcac |
123 |
Q |
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| T |
19597628 |
aaactatccgattctaatgcaccaccatcttcatcaaagaacccacta---tcttcatcagagaaaccaccatcttcactgcagccacagcaatcttcat |
19597532 |
T |
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| Q |
124 |
tgccaccaaggccattttcattcctgcgaagaagaacgcaatctttaacggagctaccatcacaatccaatacaccatcttcaccgcagccaccacgacc |
223 |
Q |
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|||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19597531 |
tgccacgaaggccgttttcattcctgcgaagaagaacgcaatctttaacggagctaccatcacaatccaatacaccatcttcaccgcagccaccacgacc |
19597432 |
T |
|
| Q |
224 |
accatatcattctattctaccaacaaatctgtcgctggtaccatcttcttcatcacagccacctcgaacactgtattatgatatggtaccgtattggcca |
323 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
19597431 |
accatatcattctattctaccaacaaatctgtcgctggtaccatcttcttcatcacagccacctcgaacactgtattataatatggtaccgtattggcca |
19597332 |
T |
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| Q |
324 |
ctacgaccaccttgttattcttttccgtcacagccaccaccaccaccattaacaccatcacc |
385 |
Q |
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| T |
19597331 |
ctacgaccaccttgttactcttttccgtcacagccaccaccaccaccatcaacaccatcacc |
19597270 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 24 - 74
Target Start/End: Complemental strand, 19597766 - 19597716
Alignment:
| Q |
24 |
aaactatccgattctaatgcaccaccatcttcatcaaagaaaccactacct |
74 |
Q |
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||||||||||||||||||||||||||||||||||| ||||| |||| |||| |
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| T |
19597766 |
aaactatccgattctaatgcaccaccatcttcatccaagaatccaccacct |
19597716 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 24 - 74
Target Start/End: Complemental strand, 19597697 - 19597647
Alignment:
| Q |
24 |
aaactatccgattctaatgcaccaccatcttcatcaaagaaaccactacct |
74 |
Q |
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||||||||||||||||||||||| ||||||||||| ||||| |||| |||| |
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| T |
19597697 |
aaactatccgattctaatgcaccgccatcttcatccaagaatccaccacct |
19597647 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 175 - 232
Target Start/End: Complemental strand, 19592874 - 19592817
Alignment:
| Q |
175 |
agctaccatcacaatccaatacaccatcttcaccgcagccaccacgaccaccatatca |
232 |
Q |
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|||||||||| ||||||||| |||||| |||| |||||| ||||| |||||||||||| |
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| T |
19592874 |
agctaccatcccaatccaatgcaccattttcaacgcagcgaccacaaccaccatatca |
19592817 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 34 - 74
Target Start/End: Complemental strand, 19597828 - 19597788
Alignment:
| Q |
34 |
attctaatgcaccaccatcttcatcaaagaaaccactacct |
74 |
Q |
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||||| ||||||||||||||||||||||||| |||| |||| |
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| T |
19597828 |
attctgatgcaccaccatcttcatcaaagaacccaccacct |
19597788 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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