View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3309_low_11 (Length: 391)
Name: NF3309_low_11
Description: NF3309
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3309_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 326; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 17 - 381
Target Start/End: Original strand, 4926210 - 4926575
Alignment:
| Q |
17 |
cagtgggaagattgaagaaaattattcccctctattttgatggcagcata-gcatttgtataactgaaaaaagagattgtaattggctatttacaagagg |
115 |
Q |
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| T |
4926210 |
cagtgggaagattgaagaaaattattcccttctattttgatggcagcatatgcatttgtataactgaaaaaagagattgttattggctatttacaagagg |
4926309 |
T |
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| Q |
116 |
aggataagaccagatttgattttttgtaatattgtaggatattcacgaaatttgagataaagggattattttatcttagatttaaataggcattggttgc |
215 |
Q |
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| T |
4926310 |
aggataagaccagatttgattttttgtaatattgtaggatattcactaaatttgagataaagggattattttatcttagatttaattaggcattggttgc |
4926409 |
T |
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| Q |
216 |
taggttgcatcacagtaaatttaaataggattttatcttagaattaaaaggtaacagaataatgaagatttagtttaactggataattgcgtacttcatt |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||| ||||||||| |
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| T |
4926410 |
taggttgcatcacagtaaatttaaataggattttatcttagaattaaaaggtaatagaatattgaagatttagtttaactggataattgcatacttcatt |
4926509 |
T |
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| Q |
316 |
actgtttcacttctagcatttatgttggatgcttttacattattacatgctctttaagcacctatg |
381 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
4926510 |
actgtttcacttctagcatttatgttggatggttttacattattacatgctctttaagcacctatg |
4926575 |
T |
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