View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3309_low_13 (Length: 384)
Name: NF3309_low_13
Description: NF3309
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3309_low_13 |
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Alignment Details
Target: chr2 (Bit Score: 293; Significance: 1e-164; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 18 - 371
Target Start/End: Original strand, 35224829 - 35225185
Alignment:
| Q |
18 |
ttatggatgtatgattggtgctttatagataaagacaatgaagccctatctatggcacgcaagcttaatagataactttgacatcatttcaatgtctttc |
117 |
Q |
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| T |
35224829 |
ttatggatgtatgattggtgctttatagataaagacaatgaagccctatctatggcacgcaagcttaatagataactttgacgtcatttcaatgtctttc |
35224928 |
T |
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| Q |
118 |
tggaattttaagatgctaatcaagttcgttcttcaattggaatg--tttgataacatatcnnnnnnn-gggacaaatctgattaatatcttgcaattcca |
214 |
Q |
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| T |
35224929 |
tggagttttaagatgctaatcaagttcgatcttcaattggaatgcatttgataacatatcaagacaaagggacaaatctgattaatatcttgcaattcca |
35225028 |
T |
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| Q |
215 |
gagaccattttggaatatttataatgtgtaggactaggttgatacaatgctacaattcaaggaccaaaatatgtttataagttctgtaacatttggtaga |
314 |
Q |
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| T |
35225029 |
gagaccattttggaatatttataatgtgtaggactaggttgatacaatgctacaattcaaggaccaaaatatgcttataagttctgtaacatttggtaga |
35225128 |
T |
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| Q |
315 |
aacaaaactaaagaaggtatataagactgtgtgagtgagtaagtaaagtacctatgc |
371 |
Q |
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| T |
35225129 |
aacaaaactaaagaaggtatataagactgtgtgagtgagtgagtgaagtacctatgc |
35225185 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 198 - 261
Target Start/End: Original strand, 9650831 - 9650894
Alignment:
| Q |
198 |
aatatcttgcaattccagagaccattttggaatatttataatgtgtaggactaggttgatacaa |
261 |
Q |
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| T |
9650831 |
aatattttgcaattccatagacgattttggattattgataatgtggggggctaggttgatacaa |
9650894 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000009; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 199 - 258
Target Start/End: Complemental strand, 24917786 - 24917727
Alignment:
| Q |
199 |
atatcttgcaattccagagaccattttggaatatttataatgtgtaggactaggttgata |
258 |
Q |
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| T |
24917786 |
atattttgcaattccagggatcattttggaatattgataatagggaggactaggttgata |
24917727 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 199 - 258
Target Start/End: Complemental strand, 24993696 - 24993637
Alignment:
| Q |
199 |
atatcttgcaattccagagaccattttggaatatttataatgtgtaggactaggttgata |
258 |
Q |
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| T |
24993696 |
atattttgcaattccagggatcattttggaatattgataatagggaggactaggttgata |
24993637 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 194 - 271
Target Start/End: Original strand, 26270906 - 26270983
Alignment:
| Q |
194 |
gattaatatcttgcaattccagagaccattttggaatatttataatgtgtaggactaggttgatacaatgctacaatt |
271 |
Q |
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| T |
26270906 |
gattaatattttgcaattccaatgatcattttggaatattgataatgtgagagattagattgatacaatcatacaatt |
26270983 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 183 - 271
Target Start/End: Complemental strand, 55570960 - 55570873
Alignment:
| Q |
183 |
gggacaaatctgattaatatcttgcaattccagagaccattttggaatatttataatgtgtaggactaggttgatacaatgctacaatt |
271 |
Q |
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| T |
55570960 |
gggacaagcctgattaacattttgcaattcactaaatcattttgaaatattaataatgtg-aggactaggttgataccatcctacaatt |
55570873 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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